Sequence
atgc intronic sequence ATGC exonic sequence...tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgtgatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G31980.1 (Glycine max), 3'ss of exon 3
--tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgtgatttctgatc-cctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
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gtaacctgtgtattctagaatacttttgcactggttcacttttgattt---cttgtttattaattgtttttcttaatctgacaaacattgccctttttagtagGTTGTAAATGGACTTCTTCAAAGAGAGGATTGGGATACGGCAATAAAGATGCCCCTTGGGGTAGTTCCTGCAG
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G07340.1 (Glycine max), 3'ss of exon 3
tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgtgatttctgatc-cctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
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ccatgtaacctgtgcattctaaaatacttttgcactggttcacttttgatgtctccattaattgtttttcttaatctgacaaatattgcacattt-agtagGTTGTAAATGGTCTTCTCCAAAGAGAGGATTGGGATACGGCAATAAAGATGCCCCTTGGGGTAGTTCCTGCAG
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G21540.2 (Arabidopsis thaliana), 3'ss of exon 3
tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgt-----gatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
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--ctcttgtttaattatatgtttactgttttgcttatgtttgactctgggattagaaaattattgtattggtagtgattcttaaaattggttcctaatttagTAGGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATTGCCGATCGGAATGGTCCCTGCAG
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G21540.1 (Arabidopsis thaliana), 3'ss of exon 3
---tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgtgatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
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ttgtttaattatatgtttactgttttgc-ttatgtttgactctgggattagaaa--attattgtattggtagtgattcttaaaattggttcctaatttagtagGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATTGCCGATCGGAATGGTCCCTGCAG
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G21534.1 (Arabidopsis thaliana), 3'ss of exon 3
tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgt-----gatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
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-----ttgttaaattatatgtttactcttttgcttaggtttgactctggggttaaacaatcattttattgttgctgattcttacacttggttcctaatttagtagGTTGTAAATGGACTGCTCGAAAGAGCAGACTGGAGAAATGCCTTAAAATTGCCTATTGGAATGGTCCCTGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721143|gb|FC070385.1|FC070385EST: CAAAGTATGATGGCCTCGTTTGTGTCAGCGGGGATGGAATTCTTGTTGAG T
genomic: CAAAGTATGATGGCCTCATTTGTGTCAGCGGGGATGGAATTCTTGTTGAGgttagttggc ... attttagtag-
EST:
gi|161721143|gb|FC070385.1|FC070385EST: CAAAGTATGATGGCCTCGTTTGTGTCAGCGGGGATGGAATTCTTGTTGAG T
genomic: CAAAGTATGATGGCCTCATTTGTGTCAGCGGGGATGGAATTCTTGTTGAGgttagttggc ... attttagtag-
EST:
gi|161721143|gb|FC070385.1|FC070385EST: CAAAGTATGATGGCCTCGTTTGTGTCAGCGGGGATGGAATTCTTGTTGAG T
genomic: CAAAGTATGATGGCCTCATTTGTGTCAGCGGGGATGGAATTCTTGTTGAGgttagttggc ... attttagtag-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taggtgtgatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
ttctgat putative branch site (score: 3)
tccctttctctttctt CT-rich tract
tttcttataatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctcttatctgcctaaatctgtgtgttattactcaaccttgagttaggtgtgatttctgatccctttctctttcttataattttttcacattttagtagGTAGTAAATGGACTGCTTGAAAGAGATGATTGGGATTCTGCAATAAAGATGCCTATTGGGGTTATTCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - tctgcct
- - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - ctcaacc