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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacttcttgcatttggattttataagagagtttcgtgttgtgattttcatagcttatttcagtcactaaattctttgtgcatcattcttctcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG

Basic information

species Vitis vinifera
transcript Vv16s0050g00490.t01
intron # 29
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 29
lower sequence: GLYMA10G37900.1 (Glycine max), 3'ss of exon 29
aacttcttgcatttggattttataagagagtttcgtgttg--tgattttcatagcttatttcagtcactaaatt---ctttgtgcatcattcttctcttga-gcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG
      |||  ||    || |  || |  || |   | ||  |  | |  |||  |||  | |     |||| |   ||   ||||  |||  | | |||  |||| ||||||||||||| |||| ||||||||| || ||||||||||||||||| ||||||  ||||| |    |||||||| |    ||||||||||||
------ttggtttgttgttattcaaaactgtattcagctgtttattctctatattttaggttaaaacttaaaattaactaattgcagaattgatgttttgttgcagACTGAATATCCAAAGTACATTCCATTGCTTGCCAAGATTTTGGAAGGTTTAGTTTCTAGGAGTAGTATCAAAGACAAAGTCCATCATGATGAAGAG

upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 29
lower sequence: GLYMA16G30190.2 (Glycine max), 3'ss of exon 29
-----aacttcttgcatttggattttataagagagtttcgtgttgtgattttcatagcttatttcagtcactaaattctttgtgcatcattcttctcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG
     || |   || || |   | | ||||  |  ||  |   | |  | | ||||   |  || | | | |||||     ||     ||  |||  |   |||||| ||||||||||| ||||||||||| || || | ||||||||||||||| ||||||  |||||||    ||||||||||    ||||||||||||
attgtaattggctgtatattt-tctgataaatgtattcagctgtctattctccatattattatttattaattaaataaac-gtatgctatatttcctt---gcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAGTTTCTTGGAGTAATATCAAAGACAAAATCCATCATGATGAAGAG

upper sequence: Vv16s0050g00490.t01 (Vitis vinifera), 3'ss of exon 29
lower sequence: GLYMA09G25250.1 (Glycine max), 3'ss of exon 29
---aacttcttgcatttggattttataagagagtttcgtgttgtgattttcatagcttatttcagtcactaaattctttgtgcatcattcttctcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG
   || |       | || || || |  ||    |  || ||  | | |  ||    | | | | | | |||||  |   || ||  ||||  |     |||||  ||||||||||| ||||||||||| || || | ||||||||||||||| ||||||  ||||||||    |||||||||    ||||| ||||||
caaaattgtgattgtctgtatattttctgaataat--gtattcagctgtctattctctgtattattaattaaataatacatgaat-gttctatttccttgcagTTAGAATATCCAAAGTACACTCCATTACTTGCAATGATTTTGGAAGGTTTAGTTTCTAGGAGTAATGTCATAGACAAAATCCATCATGACGAAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809590|gb|FQ414480.1|FQ414480
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349817461|gb|FQ407251.1|FQ407251
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351039026|gb|FQ457701.1|FQ457701
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351056447|gb|FQ454308.1|FQ454308
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349811562|gb|FQ409558.1|FQ409558
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351044162|gb|FQ452835.1|FQ452835
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349811041|gb|FQ406029.1|FQ406029
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349818352|gb|FQ409127.1|FQ409127
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351042671|gb|FQ451086.1|FQ451086
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349824505|gb|FQ413172.1|FQ413172
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349824556|gb|FQ413223.1|FQ413223
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349814862|gb|FQ410085.1|FQ410085
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349813697|gb|FQ413931.1|FQ413931
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351034908|gb|FQ458265.1|FQ458265
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349811081|gb|FQ406069.1|FQ406069
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351035476|gb|FQ463321.1|FQ463321
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351045622|gb|FQ440807.1|FQ440807
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349822506|gb|FQ412770.1|FQ412770
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349810172|gb|FQ401618.1|FQ401618
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351038517|gb|FQ464383.1|FQ464383
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349814599|gb|FQ399239.1|FQ399239
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349819862|gb|FQ404534.1|FQ404534
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349807376|gb|FQ401368.1|FQ401368
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349814881|gb|FQ410104.1|FQ410104
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|352795665|gb|FQ480253.1|FQ480253
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349812607|gb|FQ407226.1|FQ407226
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351056626|gb|FQ442454.1|FQ442454
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349815086|gb|FQ410309.1|FQ410309
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351047462|gb|FQ454954.1|FQ454954
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351026108|gb|FQ428120.1|FQ428120
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|71875416|gb|DT024471.1|DT024471
EST:     GCACTGATGAAGAGCTCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351051717|gb|FQ449531.1|FQ449531
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|349816321|gb|FQ399431.1|FQ399431
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
EST: gi|351053468|gb|FQ459215.1|FQ459215
EST:     GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG                         TCTGAATGTCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG
genomic: GCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAGgtcaaaactt ... tcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatagcttatttcagtcactaaattctttgtgcatcattcttctcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG
                  cactaaa  putative branch site (score: 2)
                                  catcattcttctctt  putative PPT
                     taaattcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacttcttgcatttggattttataagagagtttcgtgttgtgattttcatagcttatttcagtcactaaattctttgtgcatcattcttctcttgagcagTCTGAATATCCAAAATACACTCCATTGCTCGCTAAGATTTTGGAAGGTTTGGTTTCTGAGAGTAATGCTGAAGACAAAATTTGCCATGATGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - gcatttg
- - - - - - - - - - - taagaga
- - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - -catagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgc