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gtcctgagtgtcgcttatgtatttctcatttatttttaatcactttcactatttatgttttgtttgacactttgttttcccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCACACAGGGTGAAAACTTGCCTGTTCATTTTGAAAAGGAACTTAAG
species | Vitis vinifera |
transcript | Vv02s0025g03560.t01 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: TTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG GTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCEST: gi|56409020|gb|CX017272.1|CX017272
genomic: TTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAGgtcctgagtg ... ccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATC
EST: TTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG GTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCEST: gi|110398103|gb|EC964221.1|EC964221
genomic: TTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAGgtcctgagtg ... ccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATC
EST: GCAATGGGCAGAAAATGCTAAGAAG GTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCEST: gi|351018473|gb|FQ439285.1|FQ439285
genomic: GCAATGGGCAGAAAATGCTAAGAAGgtcctgagtg ... ccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATC
EST: TTACAAAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG GTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATC
genomic: TTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAGgtcctgagtg ... ccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATC
tttaatcactttcactatttatgttttgtttgacactttgttttcccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCACACAGGGTGAAAACTTGCCTGTTCATTTTGAAAAGGAACTTAAG
cactttgttttccc CT-rich tract
tatttatgttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctgagtgtcgcttatgtatttctcatttatttttaatcactttcactatttatgttttgtttgacactttgttttcccatgtacagGTTTCCATGGACTCTGGGGCACTTGGATTGGATGAAGTTTGTGAACTTATCACACAGGGTGAAAACTTGCCTGTTCATTTTGAAAAGGAACTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA