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...ttttacagcaaatcatttgttccctgcctagatgatactgagattttcagttgttaatctcttagatctcagctaattctattactaactgatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG
species | Vitis vinifera |
transcript | Vv16s0050g00490.t01 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349817461|gb|FQ407251.1|FQ407251
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351039026|gb|FQ457701.1|FQ457701
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351056447|gb|FQ454308.1|FQ454308
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGGTTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349811562|gb|FQ409558.1|FQ409558
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351044162|gb|FQ452835.1|FQ452835
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349811041|gb|FQ406029.1|FQ406029
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349818352|gb|FQ409127.1|FQ409127
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351042671|gb|FQ451086.1|FQ451086
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349824505|gb|FQ413172.1|FQ413172
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349824556|gb|FQ413223.1|FQ413223
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349814862|gb|FQ410085.1|FQ410085
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349813697|gb|FQ413931.1|FQ413931
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351034908|gb|FQ458265.1|FQ458265
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349811081|gb|FQ406069.1|FQ406069
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351035476|gb|FQ463321.1|FQ463321
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351045622|gb|FQ440807.1|FQ440807
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349822506|gb|FQ412770.1|FQ412770
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGCGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349810172|gb|FQ401618.1|FQ401618
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|30305348|gb|CB982142.1|CB982142
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGANACTGATEST: gi|351038517|gb|FQ464383.1|FQ464383
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349814599|gb|FQ399239.1|FQ399239
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349819862|gb|FQ404534.1|FQ404534
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAGGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349807376|gb|FQ401368.1|FQ401368
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349814881|gb|FQ410104.1|FQ410104
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAAAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|352795665|gb|FQ480253.1|FQ480253
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349812607|gb|FQ407226.1|FQ407226
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351056626|gb|FQ442454.1|FQ442454
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349815086|gb|FQ410309.1|FQ410309
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351047462|gb|FQ454954.1|FQ454954
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351026108|gb|FQ428120.1|FQ428120
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|71875416|gb|DT024471.1|DT024471
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351051717|gb|FQ449531.1|FQ449531
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTCCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|349816321|gb|FQ399431.1|FQ399431
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATEST: gi|351053468|gb|FQ459215.1|FQ459215
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
EST: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAG GTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
genomic: GTTCTTCTCCATCTTGCACCAAAAGTGTGTCAGAACGTTTAGAAGAAGAGgtactttagg ... gatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGAT
ttcagttgttaatctcttagatctcagctaattctattactaactgatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG
taattctattactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttacagcaaatcatttgttccctgcctagatgatactgagattttcagttgttaatctcttagatctcagctaattctattactaactgatcaatcagGTTCGTGATGCAAAGATAAAGATTCTTGGAAGCCTAAAACATGGCACTGATGAAGAGCGCTCAGAGTGGAGAAAGTTAGCTGCCTCTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - -aaatcat
- - - - - - - - - - -ccctgcc