1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...gattttttatcatggcataagtgccttgtcatgtttctactcctatctcagtttgcattcatgataagtgatgcctaatccatgataattcttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAACTCGACATCTGCAAAATGCTTATAAAAAACTTACAGAAGAATCAGGGG
species | Vitis vinifera |
transcript | Vv14s0128g00100.t01 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|110418692|gb|EC984856.1|EC984856
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|33409556|gb|CF215183.1|CF215183
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|22014273|gb|BQ799307.1|BQ799307
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: CCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|33402079|gb|CF207706.1|CF207706
genomic: CCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|110424723|gb|EC991093.1|EC991093
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAEST: gi|22014530|gb|BQ799564.1|BQ799564
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
EST: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCA GTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
genomic: GTATGGACAACTGGAACCATGGGAGAACTCAGCCCAgtaagttcct ... cttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTA
tctcagtttgcattcatgataagtgatgcctaatccatgataattcttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAACTCGACATCTGCAAAATGCTTATAAAAAACTTACAGAAGAATCAGGGG
gcctaat putative branch site (score: 3)
ttcttttgtt putative PPT
ataattcttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttttatcatggcataagtgccttgtcatgtttctactcctatctcagtttgcattcatgataagtgatgcctaatccatgataattcttttgttagGTTGTCAAGATTGATGGGCGCCCTGTTGGTGATGGACAAGTAGGGCCAGTAACTCGACATCTGCAAAATGCTTATAAAAAACTTACAGAAGAATCAGGGG
- - - - -tcatggc
- - - - - - - - - - -tgccttg
- - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat