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...atgagttcatagatgataatttgttgcattaataagcataactggtgattaaggttttgccttacataaatgctaagtgtgattaatgctcgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG
species | Vitis vinifera |
transcript | Vv02s0025g03560.t01 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: AGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAG GGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAEST: gi|56409020|gb|CX017272.1|CX017272
genomic: AGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAGgtatgccctg ... cgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACA
EST: AGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAG GGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAEST: gi|351018473|gb|FQ439285.1|FQ439285
genomic: AGGATTCTCAGAAGCCCCTGATCCAACATATTCAAAAAATTTTGAAAGAGgtatgccctg ... cgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACA
EST: CAAAAATTTTTGAAAGAG GGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACA
genomic: CAAAAAATTTTGAAAGAGgtatgccctg ... cgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACA
tgattaaggttttgccttacataaatgctaagtgtgattaatgctcgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG
gattaat putative branch site (score: 3)
ttacataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagttcatagatgataatttgttgcattaataagcataactggtgattaaggttttgccttacataaatgctaagtgtgattaatgctcgcatggcagGGATTGGCCATAAGCATACCACCTGAAGATCACTTCAGGCAGAAACTTACAGAATTGAAGTGCATTGGCTTGCAATGGGCAGAAAATGCTAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - aataagc
- - - - - - - - - - - - - - - - - - - - -ctggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acataaa