Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttccttatttgcatgtggtaattttattaaatttaagttggaatctttttttttttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 27
lower sequence: LOC_Os03g48300.1 (Oryza sativa), 3'ss of exon 27
gtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttccttatttgcatgtggtaattttattaaatttaagttggaatctttttttttttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
| | || |||| ||||| | || | | | || | ||| || | | || || | || | | | |||||||||| ||||| || ||| |||||||||| || ||||| || ||||||||||| | ||| | || |||||||||||||| ||| | | ||||| || |
----------------------------------------------------------gtatgcatgagacttcatgttcagc-tttgcttttgttcttatcatcatttttggatttaattgttattctaacattctcttt---aacagGAATCTCACATACACTCCTTAATGAATGTCCTTCGCTATTGCAACTTGGATGAATGTCTACAAGGGGAGGATAGCCTTGTCTGCCAAAGCGCTTTAGACC
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 27
lower sequence: GLYMA18G49000.1 (Glycine max), 3'ss of exon 27
gtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttccttatttgcatgtggtaattttattaaatttaagttggaatctttttttt---tttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
||| | | || ||| | ||| || | || ||| |||| | | ||| |||| | || | | || | |||||||||||| |||||||| || ||||||||||| || || ||||| | |||||| |||||||| | ||| || ||||| |||||| |||||||| | ||||
---------------------------------------------------tttgtaacataacaagaataaaacaaagtcttgtg-gcaagtagcttggtttttagttttatttccatacttttgttttaacctattatgtatgttgacagGAATCACATATCCATTCTCTCATGAATGTTCTTCGTTATTGTAATTGGGATGAATCTCTTCTAGATGAAGAGAGCCTCGTTTGCTATAATGCTCTAGAGC
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 27
lower sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 25
gtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttcctt-atttgcatgtggtaattttattaaatttaagttggaatctttttttt--tttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
| || || || | || || | | | | | | || | ||| |||| | | ||| |||| | || || || ||||||||||| || ||||| || ||||||||||| || || ||||| |||||||| |||||| | | ||| || ||||| ||||| |||||||| | ||||
----------------------------------------------------gattcatccaaagtcaggttcataattttttgacatttgtatagaatttatcttagttttatttccatacttttgttttaacctattatttatattgcagGAATCACATATTCATTCTCTCATGAATGTTCTTCGTTATTGTAATTTGGATGAATCTCTTTTAGATGAAGAGAGCCTAGTTTGTTATAATGCTCTAGAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaattttattaaatttaagttggaatctttttttttttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
tctttttttttttttt CT-rich tract
tttattaaatttaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttccttatttgcatgtggtaattttattaaatttaagttggaatctttttttttttttttttgtgataacagGAATCACACATCCATTCCCTAATGAATGTTCTCCGCTACTGTAACTTGGATGATTCTCTTCTTGGTGAGGATAGCCTTGTTTGCGATAATGCTTTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG