Sequence
atgc intronic sequence ATGC exonic sequencegtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 26
lower sequence: GLYMA09G37610.1 (Glycine max), 3'ss of exon 24
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
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--------gtaaatattatgtctttgtttta-ttgtgtacattatcact-tgcattctaatacttttttatcgtccacctccagGTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTTCACATCA
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 26
lower sequence: GLYMA19G02260.1 (Glycine max), 3'ss of exon 24
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
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--------gtgaataacaggtcctcatctga-ttttctacattattatgatctgttctaa-----tcttattgttttgcaccagGTATGCAAATGTGAAGACACCTGAGCGCCATGTGCGAACACGCCTCTACTTCACATCA
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 26
lower sequence: GLYMA13G05060.1 (Glycine max), 3'ss of exon 40
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
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--------gtgaacatcgggtcctcatctga-ttttctacattattatgatctattctaa-----tcttattgttttgcaccagGTATGCAAATGTGAAGACACCTGAGCGCCATGTGCGAACACGCCTCTACTTCACATCA
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 26
lower sequence: GLYMA18G49000.1 (Glycine max), 3'ss of exon 26
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
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--------gtaagtattatgtctttgtttta-ttttgtacattctcact-tgtattctaatacttttttatcgtccacctctagGTATGCAAATGTAAAGTCGCCTGAACGCCATGTGCGAACACGCCTATACTTCACATCA
upper sequence: Vv14s0066g02540.t01 (Vitis vinifera), 3'ss of exon 26
lower sequence: AT3G01310.2 (Arabidopsis thaliana), 3'ss of exon 27
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattattta---tattaagatttccttgttatttt-caatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
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------gtaatagtctttactttctctctcactcttatatagat-agttatttcggctactaattggtggttttcatttcgcttttagGTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
tttccttgttattttc CT-rich tract
aattatttatattaag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaatacatgaaccacttaagtttgtcttagtcctgtacacctcaattatttatattaagatttccttgttattttcaatcagGTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA