1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtgagttaaaatataatggtgttattgcttcgtcattgcaaaatatatactgcctttcaagatgacttttattttgtttttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACA
species | Vitis vinifera |
transcript | Vv13s0064g00180.t01 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGEST: gi|351032202|gb|FQ460459.1|FQ460459
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGEST: gi|351031564|gb|FQ459821.1|FQ459821
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGEST: gi|351037685|gb|FQ464126.1|FQ464126
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
EST: ACAAGATCTCACAAACTGCCCTTTTAGGCTGGTTGATGAGATAAATCAAG GAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
genomic: ACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaa ... ttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTG
attgcaaaatatatactgcctttcaagatgacttttattttgtttttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACA
cttttattttgttttt CT-rich tract
acttttattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttaaaatataatggtgttattgcttcgtcattgcaaaatatatactgcctttcaagatgacttttattttgtttttccccctagGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC