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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacttgtaattaatttttaccagtcatacctaaatgattaagtttcttatcactctgaagttgaaaattttctattttattcaaatttatcatttcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA

Basic information

species Vitis vinifera
transcript Vv15s0048g01650.t01
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 3'ss of exon 25
lower sequence: LOC_Os04g46894.1 (Oryza sativa), 3'ss of exon 24
gtatgtacttgtaattaatttttaccagtcatacctaaatgattaagtttcttatcactctgaagttgaaaattttctattttattcaaatttatcatttcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA
                      |||  || ||  |    ||  |||  ||   |  ||  |   ||  ||       ||| | |  |  |   || | | |||||||||||||  | ||||||||||||||| |||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| ||||| |||||||||||
---------------------gtacttgt-atttcagcttgtgtaaaatttacagtacaattc-gtaaaagcagagttatgtaaccccgaac-ataaatgcagATTCTGTAAATTTGCCTCCTTGGGCTGAGGACCCTGTTGATTTTGTCCATAAACACCGGAAGGCTCTTGAGAGTGAGCATGTTTCTGCTCATTTGCATGA

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 3'ss of exon 25
lower sequence: LOC_Os02g44380.2 (Oryza sativa), 3'ss of exon 18
gtatgtacttgtaattaatttttaccagtcatacctaaatgattaagtttcttatcactctgaagttgaaaattttctattttattcaaatttatcatttcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA
                                    |  |  ||   ||   |||   |  |    || |  |   ||  | || |      |   ||| |||  |||||  || | |||||||||||||||||||| |||||||| ||   ||| ||| ||| |||||||||||||||  ||||||| || |||||||||||
---------------------------------gtaagtttgtttcattctgtatgcataagggaatggagctgaactcctctaatgttgagttgtattgcagCCTCTGTGCAATTGCCTCCTTGGGCTGAGAACCCTGTTGATTTCATATGTAAACACAGGAAGGCTCTTGAGAGTGATTATGTCTCCGCTCATTTGCATGA

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 3'ss of exon 25
lower sequence: GRMZM2G044143_T01 (Zea mays), 3'ss of exon 24
gtatgtacttgtaattaatttttaccagtcatacctaaatgattaagtttcttatcactctga--agttgaaaattttctattttattcaaatttatcatttcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA
                          | |   |  | ||   ||| ||    |||    ||||  || | ||||   |  ||   ||||   |  | |||| ||||||| ||| || | ||||| |||||||| || |  || |||||| | ||||| || |||| |||||||||||||||||| |||||||| |||||||||||
------------------------gtaattgcatttcaac--ttatgtccactatgcagctgagtagataaaaacagta-atgcaattccggt--accattgcagATTCCGTAGAATTGCCTCCCTGGGCTGAAAATCATGTGGATTTTGTCCATAAACATCGGAAGGCTCTTGAGAGTGAGCACGTCTCTGCTCATTTGCATGA

upper sequence: Vv15s0048g01650.t01 (Vitis vinifera), 3'ss of exon 25
lower sequence: AT2G45540.2 (Arabidopsis thaliana), 3'ss of exon 26
gtatgtacttgtaattaatttttaccagtcatacctaaatgattaagtttcttatcactctgaagttgaaaattttctattttattcaaatttatcatt--tcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA
    ||| |||| |||   |||| |  |||||| | |||   ||| |  |   ||         ||   || |||  ||| | || |   ||| | ||   | |||| ||||||||||||||||||||||  | |||||||| |||||| | || ||||| || | |||||||||||| |||||||| ||||| |||||||||||
----gta-ttgtgatt--cttttccttgtcatagccaaa-atttatgcgtggcat--------ggtgagaattttgttatctgatgcggtttttttatctattagATGCTGTAAAACTTCCTCCTTGGGCCAAAAACCCAGTGGATTTTGTACACAAGCAACGAAGGGCTCTTGAGAGCGAGCATGTATCTGCTCATTTGCATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatcactctgaagttgaaaattttctattttattcaaatttatcatttcagATTCTGTAAAACTTCCTCCTTGGGCTGAGAACCCAGTTGATTTTATTCATAAGCACCGGATGGCTCTTGAGAGTGAGCATGTCTCTGCACATTTGCATGA
                                              tcatttc  CT-rich tract
              aagttgaaaattttct  TA-rich tract