1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...ctttcgctctcatcattgaaaagaagcagtcccttgaagattcattgattttgactgtagacttcctgactgaaaaatattcctctgtttcatattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTCCTGGGATAACTCGAGCTACT
species | Vitis vinifera |
transcript | Vv14s0128g00100.t01 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT TTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTEST: gi|33409556|gb|CF215183.1|CF215183
genomic: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATTgtaagactgc ... catattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTT
EST: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT TTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTEST: gi|33402079|gb|CF207706.1|CF207706
genomic: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATTgtaagactgc ... catattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTT
EST: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT TTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTEST: gi|22014530|gb|BQ799564.1|BQ799564
genomic: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATTgtaagactgc ... catattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTT
EST: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT TTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTT
genomic: TCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATTgtaagactgc ... catattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTT
tgattttgactgtagacttcctgactgaaaaatattcctctgtttcatattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTCCTGGGATAACTCGAGCTACT
tcctgac putative branch site (score: 2)
tattcctctgtttc putative PPT
tgaaaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcgctctcatcattgaaaagaagcagtcccttgaagattcattgattttgactgtagacttcctgactgaaaaatattcctctgtttcatattgcagTTCTTAGTGAAGAAAGGTCATGTTCTGACACCTCATGCTGATTACTGCCTTCCTGGGATAACTCGAGCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - cgctctc
- - - - - - - - - aaaagaa
- - - - - - - - - - - - - cagtccc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata