Sequence
atgc intronic sequence ATGC exonic sequencegtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: LOC_Os07g47530.1 (Oryza sativa), 3'ss of exon 24
gtaaggcatcactgagccattttgttggactatcctactttatttccaca---aactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
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-----gtaacttttt-ttacatcgctgtggtattcc-ttttatttttacaatgaaatgctaatggttgcttgcctgatcacatatcaatt-tagGTTGATGGTGAATTTGCCAGATGCATCCAATAGAAAAAAGATTCTTAGCGTAATACTGGCCAAAGAAGATTTGGCTGATGATGTAGATCTGGAAGCTCTG
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GRMZM2G168228_T01 (Zea mays), 3'ss of exon 3
gtaaggcatcactgagccat--tttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
|| | ||| | || | | | ||| | | || | || | |||| | | |||| || ||||| |||||||||||||||||||||||||| ||||||| ||| ||||| | || ||||| || || || || ||| | || |||||| | || | |
gtgatttatcgtttgtttatagcctaatacaacatctgtcaatggttttttgacctcagtctta----tggggcaatgatt--tcttt---agGTTGATGGTGAATTTGCCAGATGCATCAAATAGGAGAAAAATTCTTAGTGTAATACTAGCCAAGGAAGATTTGGCAGACGACGTTGATCTAGAAACTATA
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 19
gtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
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-------------gtgatttattgtttgtttatagcctaatacgacatctgtcaatagtttattgacctcagtcttgtgtgtgttctctagGTTGATGGTGAATTTGCCAGATGCATCAAATAGGAGAAAGATTCTTAGTGTAATACTAGCCAAGGAAGATTTGGCAGACGATGTTGATCTAGAAGCTATA
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 22
gtaaggcatcactgagccattttg-ttggactatcctactt-tatttccacaaactgggac---------ttagtt---cttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
|| || | | | | | | || || | | ||| | ||||| ||| |||| | |||| ||| |||||| || | |||| ||| |||||||| |||||||||||||| || ||| ||||||| || | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
gtgag-tacctttattcaactgtgcttcaattccccttccaatattttgtaaaagggggagggaccagcataagttaaccttttgtaata-tttgttttttgcagATTGATGGTAAATTTGCCAGATGCCCCTAATCGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTT
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA05G03270.2 (Glycine max), 3'ss of exon 20
----gta-aggcatcactgagccattttgttggactatcctactttatttccacaaactgggact--tagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
|| | || | || || || |||| | | || | | || | || |||||| || ||||| ||| |||||||| ||||||||||||||||| |||||||| || || | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||
gtgaatatattcaactgtgcttcaattccccttcctattattttgtaagggggaggcccaacataagtaaattttttgtaattatt-gtctttggcagATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCGAAAATATTGAAAGTTATCCTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTA
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA04G37050.1 (Glycine max), 3'ss of exon 7
-----------------------------------------------gtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggactt--agttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
| || | | | | || || | ||| | || || | |||| | | | || |||| | ||| || ||||| |||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||||| || || |||||||| ||
gtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATATTAATATGGATGCAATT
upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 24
----------------------------------------------gtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
| || | | | | || | | | ||| | || || | | |||| | | || |||| | ||| || ||||| |||||||| |||||||||||||||||||| || | ||||| ||||| | |||||||||||||||| ||||| ||||| |||||||| ||
gtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTTGAAAAAGAGGACTTGTCTTCTGATATTGATATGGATGCAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
ttcatctttt CT-rich tract
atctttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggcatcactgagccattttgttggactatcctactttatttccacaaactgggacttagttcttctgtaatggttcatcttttacagGTTGATGGTGAATTTGCCAGATGCTCCAAATAGAGCAAAGATTCTAAAAGTGATACTGGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA