1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
...taatgttgatgggtacaaatttatgttttattttgttatgaacatggtttcaatgtgttattgttatatgaaatgccctggtgatttctttttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAAATGGTGCTTTTAAGACCTCAGTTTTAGTTCCAGG
species | Vitis vinifera |
transcript | Vv16s0050g00490.t01 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351056447|gb|FQ454308.1|FQ454308
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351042671|gb|FQ451086.1|FQ451086
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351034908|gb|FQ458265.1|FQ458265
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351035476|gb|FQ463321.1|FQ463321
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCTTCCAGATGGCCCAATTATGGGAEST: gi|30305348|gb|CB982142.1|CB982142
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351038517|gb|FQ464383.1|FQ464383
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351056626|gb|FQ442454.1|FQ442454
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAGATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351026108|gb|FQ428120.1|FQ428120
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAEST: gi|351051717|gb|FQ449531.1|FQ449531
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
EST: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAG GAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
genomic: AGAAAATGAAGCAATTGCTGTTGTTTATTGAAAGAAATGTGGAAGATAAGgtaatcgagt ... tttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGA
ggtttcaatgtgttattgttatatgaaatgccctggtgatttctttttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAAATGGTGCTTTTAAGACCTCAGTTTTAGTTCCAGG
ttttaat putative branch site (score: 3)
tttctttttaattc CT-rich tract
ttattgttatatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgttgatgggtacaaatttatgttttattttgttatgaacatggtttcaatgtgttattgttatatgaaatgccctggtgatttctttttaattcagGAAGCTGTTCGATTGAGCTTTTTCTCTCAACCAGATGGCCCAATTATGGGAAATGGTGCTTTTAAGACCTCAGTTTTAGTTCCAGG
- - - tgatggg
- - - - - - - acaaatt
- - - - - - - - - - - - - - - - - - - -gaacatg
- - - - - - - - - - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgccc