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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaatacaactgaacatttatttattttaggatggataaatgatgtttagctcagtaacattcactattatccaattgacagGTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGATGCACGAGAGCGGGTATCAGAGATTTTATCCCGTTAGCTTTCTGAAATG

Basic information

species Vitis vinifera
transcript Vv13s0019g04770.t01
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363229|gb|EC926805.1|EC926805
EST:     GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGA                         GTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA
genomic: GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGAgttagtgaat ... caattgacagGTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA
EST: gi|110717691|gb|EE093767.1|EE093767
EST:     GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGA                         GTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA
genomic: GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGAgttagtgaat ... caattgacagGTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA
EST: gi|30303826|gb|CB980620.1|CB980620
EST:     GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGA                         GTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA
genomic: GCCCTTCTTGCATTCATCACGGAGCATGAGAATCTATTTACAGCCACAGAgttagtgaat ... caattgacagGTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggatggataaatgatgtttagctcagtaacattcactattatccaattgacagGTACACAAATCTTCTGAAGGTCCAGGTCCCAGGAAGGGAGATCCCTGCAGATGCACGAGAGCGGGTATCAGAGATTTTATCCCGTTAGCTTTCTGAAATG
                         cagtaac  putative branch site (score: 2)
        ataaatgatgttta  TA-rich tract