1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaagaaaatcgtcccttccaaagttggacttttggggattatcctttcacaggttttgcactaacagttgcttcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAATCCAGATTACAGGGAGGATCACTAGTTTCGATGGCCGGGACATTAGTAG
species | Vitis vinifera |
transcript | Vv12s0028g03130.t01 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: ACGCCTGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAAEST: gi|110709751|gb|EE085484.1|EE085484
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: CTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAAEST: gi|110416060|gb|EC982014.1|EC982014
genomic: CTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAAEST: gi|27584813|gb|CB007508.1|CB007508
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAAEST: gi|110365725|gb|EC929133.1|EC929133
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTAAAAGAGAAEST: gi|27582517|gb|CB005212.1|CB005212
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTAAAAGAGAAEST: gi|161713613|gb|FC062533.1|FC062533
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
EST: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAA ATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTAAAAGAGAA
genomic: ACGCCAGTTCTCCTGGCTGCTGGAGATAGAGCAGAACTTGCTACAGAGAAgtaagaaaat ... tcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAA
acttttggggattatcctttcacaggttttgcactaacagttgcttcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAATCCAGATTACAGGGAGGATCACTAGTTTCGATGGCCGGGACATTAGTAG
cactaac putative branch site (score: 1)
ttgcttctt putative PPT
attat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaatcgtcccttccaaagttggacttttggggattatcctttcacaggttttgcactaacagttgcttcttgtgcagATATATTCCTGTTTCTCCTATTCTTGAAGGCTTTGTCATCCTGAAAGAGAATCCAGATTACAGGGAGGATCACTAGTTTCGATGGCCGGGACATTAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT