Sequence
atgc intronic sequence ATGC exonic sequence...ctagtgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GRMZM5G893864_T01 (Zea mays), 3'ss of exon 2
----ctagtgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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gttggccatgttatttttcctaaaattttgtctgcactattgaagtcatcatgaatctggcctg-gcttatgtggtttctaaat---tcctcctaaataaatagGTACGAATGGTAACTGGAGATAATCTGAAGACAGCTAAAGCAATAGCTCTTGAGTGTGGAATACTCGATGACTCAGAGGCATCTGCACAAGCTATAATAG
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA08G23760.1 (Glycine max), 3'ss of exon 25
---------------------------------------------ctagtgtggaa-gtgatggaaaacgtattcgaaatatgtaattccata-atatagtaatttgtga--ttgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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gtaatatgagttgtatgtttaatgggtatagtttacgtgtcttgtttcatattaattgtgttttttggctttactatggcatgagtgttcatacaaaatgtaacatgggaacccaacacattacgcattccatggtaatgaaatcacagGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGCATACTGGCTTCAATTGAAGATGCTGTTGAGCCGAATATAA
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA07G00630.2 (Glycine max), 3'ss of exon 22
-------------------------------------ctagtgtggaagtgatggaaaacgta--ttcgaaatatgtaattccataatatagtaatttgtga--ttgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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gtaatatgagttttacgggtatagtttgtgtcttgttttatattgattgtggtttttggctttactacgacatgagtggtcatacaaaat-gtaacatgggaacctaacacattacacattctacggttatgaattcacagGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGCATACTGGCTTCAATTGAAGATGCTGTTGAGCCAAATATAA
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA13G44990.1 (Glycine max), 3'ss of exon 24
-----ctagtgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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tggattctgcctttataacttgcatgagtttttatccatattcaattcctaaatataaaa-----tcaaggcaacccagcacattgtatatctgtgatctcacagGTACGGATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTAGAGTGTGGAATACTGATGTCAACTGAAGATGCTGTTGAGCCAAATATAA
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: GLYMA15G00340.1 (Glycine max), 3'ss of exon 24
---ctag-tgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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attctgcctttataacttgcgcatgagtgtttatccatattcaattcctaaatattaaaatc----aaggcaacccaacacattgtatatctgtgaactcacagGTACGGATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTTGAGTGTGGAATACTGATGTCAAATGATGATGCTGTTGAGCCAAATATAA
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 24
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 3'ss of exon 22
ctagtgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcat-gtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
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----------gtagactcctagcctcttcgaagtttacagttatgctttctagttttctatag--agattacatgaaatgatcatcttgttcatgatatagGTACGAATGGTGACTGGTGACAATCTTCAAACAGCAAAAGCAATTGCTTTGGAGTGTGGTATACTTTCTTCAGATACAGAAGCTGTTGAGCCTACTATCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860621|gb|DT009676.1|DT009676EST: GTTCAGGTGTCCAAAATGCTGTGAGAATTTGCACGAATGCTGGTGTTAAG GTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCTATAGCTTTA
genomic: GTTCAGGTGTCCAAAATGCTGTGAGAATTTGCACGAATGCTGGTGTTAAGgtagttttat ... gatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
tagtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctagtgtggaagtgatggaaaacgtattcgaaatatgtaattccataatatagtaatttgtgattgaattgttgaaaatcatgtgtttgtgatcaaatagGTACGCATGATCACTGGAGATAATCTTCAAACAGCCAAGGCAATAGCTTTAGAGTGTGGGATACTTCCTTCTGAAGCAGATGCTACTGAACCTAATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatc