1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtataaattctttctccacggtttattttggccttgatttagtgatttgatcttaactagtttcatgaacacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGCTGCAGAAAGAGATTGAGCATACTCCTTCAACAAAAACAGATGCTGCAG
species | Vitis vinifera |
transcript | Vv08s0056g00040.t01 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCAT GCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGEST: gi|56409599|gb|CX017851.1|CX017851
genomic: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCATgtataaattc ... acacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATG
EST: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCAT GCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGEST: gi|110389111|gb|EC953925.1|EC953925
genomic: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCATgtataaattc ... acacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATG
EST: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCAT GCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGEST: gi|161714502|gb|FC062952.1|FC062952
genomic: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCATgtataaattc ... acacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATG
EST: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCAT GCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATG
genomic: AGGCATGGCAGGATACTGGGATGCTTGCTGAGGCTGTGCTCCATGCTCATgtataaattc ... acacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATG
tattttggccttgatttagtgatttgatcttaactagtttcatgaacacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGCTGCAGAAAGAGATTGAGCATACTCCTTCAACAAAAACAGATGCTGCAG
tcttaac putative branch site (score: 2)
cacctcc putative PPT
ttgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaattctttctccacggtttattttggccttgatttagtgatttgatcttaactagtttcatgaacacctccagGCACATGGACGACCAACATTGAAAAACTTGGTTCAGGCTTGGAACAAAATGCTGCAGAAAGAGATTGAGCATACTCCTTCAACAAAAACAGATGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG