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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcatcttcttgctttgtttaatgtggcatgagtctctcttatgagttgaccatcaagtaactgactgcttaatggttctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATATTTTGTTAAGTTACAAGTATCATGGTATGAAGTTGCATTGGGGTTCTAT

Basic information

species Vitis vinifera
transcript Vv05s0020g01780.t01
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110425101|gb|EC991478.1|EC991478
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|254916620|gb|GR905446.1|GR905446
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|30133573|gb|CB918912.1|CB918912
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|110729542|gb|EE105594.1|EE105594
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|110694726|gb|EE072083.1|EE072083
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|30299492|gb|CB976286.1|CB976286
EST:     CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCA                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
EST: gi|30297391|gb|CB974185.1|CB974185
EST:     CCTCTGTAAAGAAACGGAAACACCTGTTGATGGATGACTACGTGAGCTCG                         GGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA
genomic: CCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGgtgagttcat ... ctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctcttatgagttgaccatcaagtaactgactgcttaatggttctctttgcagGGCAAGAGGAGGAAATGATATTTGAATGATCAAAATTTCCATTTTCTTATATTTTGTTAAGTTACAAGTATCATGGTATGAAGTTGCATTGGGGTTCTAT
                                           ttctctttgc  CT-rich tract
                                    ttaat  TA-rich tract