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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcatataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA

Basic information

species Vitis vinifera
transcript Vv17s0000g01550.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
gtgagctt---catataact---ctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtctt----agGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
||  ||||   ||| |   |    ||| |  | ||   |  |||  ||  || | |  || |  || |    |      ||    |||||||||| ||||| ||  |||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||| |
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 3'ss of exon 23
----------------gtgagcttcatataactctttttgtttatatattgtttgcttcctctct---gcttgctatattcttt--gtttggtctt--agGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                 |    | | ||| | ||     | |   ||  | || | ||   || |   | ||  ||  |||| |   || | | ||  |||||||| ||||||||||  | |||||||| |||||||||||||| || ||||| ||||||||||| || |||||||| || ||||||||  || | ||||
tgtgaatcactcttttttatattgcctatgattcagcaggctagcatgattttggtttatcctgttgagtttcttactttctatccattcgtttttgtagGTTGATGGCATGCTGGGTAGAAGGGAGAACCCAGGGGAACATGAAGCTATGCGCAAGATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 3'ss of exon 23
--------------gtgagcttcatataac-tctttttg---tttatatattgtttgcttcctc-tctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
               |         | |||  |||| ||   |   | |  ||||||||| ||  | |   | ||  ||  | ||||   |   |||||||| ||||| ||||  || | || || || || |||||||| || |||||||| |||||||| || |||||||| |||||||||||  |  | ||||
gtaagtaaattgtaattgatcaatcacaacgcctttctgaattccctgtgatgtttgctttctagtttatcttcttcatcttgtgttgtat---agGTTGATGGCATGTTGGGTAGGCGTGAAAACCCTGGAGAACATGAAGCAATGCGTAAAATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G157621_T02 (Zea mays), 3'ss of exon 22
----gtgagcttcata----taactctt--tttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
    ||||  ||| ||    | |||  |  | ||  |||    |  |   ||      | ||   |   || | |  |   | |||||||||| ||||||||||  |  | ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||  |  | ||||
gttagtgattttcttaacggtcactgatgatatgcctatgacataataagttgtagcttactcattgatttgtgtcctgtatattagGTTGATGGCATGCTGGGTAGACGTGAGAATCCAGGGGAACATGAGGCCATGCGCAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTTAGGACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 18
-------------------------------------------------------gtgagcttcatataactctt--tttgtttat---atattgtttgcttcctctctgcttgcta----tattctttgtttggtctt--agGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                         |  |  || |  |    |  |||||  ||    ||||  |   | | | ||||||   |     |  ||||  |||  | ||  |||||||| ||||||||||  || ||||||| || || |||||||| |||||||||||||||||||| || |||||||| |||||||||||  || | ||||
gtaagttatagtagtgttgtgatccatgaacaatttctatttatttgatctgtaccaggacaccacaatatctgtagtttgtcaatcccgtattaatgcatacttttctgctcatttatcctgctcttgtttttattttttagGTTGATGGCATGCTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGTAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G168228_T01 (Zea mays), 3'ss of exon 2
---------------------gtgagcttc--atataactctttttgtt-tatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                      ||| | ||  || |        | |      |    ||  |   | |  |||||   | ||| ||    ||| | |||||||||| ||||| ||||  || ||||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||||||||||  || | ||||
acttactccacctctgggactttgaacgtccaatgtggagagcctggcagccgaggaggtgggaggctttcctgctcatt-tatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G409190_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------gtgagcttcatat-----aactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                                                                                    |  | |  |||||        | || |   |  ||||||| |   | | |  |||||   | ||| ||    ||| | |||||||||| ||||| ||||  || ||||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||||||||||  || | ||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcctatattgatgcatactttcctgctcatt-tatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCGGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G370521_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------gtgagcttcatataact--ctttttgtttat---atattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                                                                                    |  | |  ||||||  |   || ||||  ||   |||||| |   | | |  |||||   | ||| ||    ||| | |||||||||| ||||| ||||  || ||||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||||||||||  || | ||||
gtacgtactggtctaattaaaggtgcatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatatgtagtttgttgtcaatcccatattgatgcatactttcctgctcatt-tatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G417650_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------gtgagcttcatataact--ctttttgtttat---atattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                                                                                    |  | |  |||||   |   || ||||  ||   |||||| |   | | |  |||||   | ||| ||    ||| | |||||||||| ||||| ||||  || ||||||| || || |||||||| |||||||| ||||||||||| || |||||||| |||||||||||  |  | ||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagcattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatt-tatcctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGGTCTAAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G482077_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------gtgagcttcatataact--ctttttgtttat---atattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                                                                                    |  | |  |||||   |   || ||||  ||   |||||| |   | | |  |||||   | ||||||    ||| | |||||||||| ||||| ||||  || ||||||| || || |||||||| |||||||| ||||||||||| || |||||||| ||||||||||   || | ||||
gtacgtactggtctaattaaaggtacatactgtcttgcttgctatgcttgtggacgaggtaagttatagtattgttgtgattcatgaacattttctgtttatttctactgtaccaggacaccaccatatctgtagtttgttgtcaatcccatattgatgcatactttcctgctcatt-tattctgcccttgtttttagGTTGATGGCATGTTGGGAAGGCGGGAGAACCCTGGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTTTATGGTGAACTGGGATGATCTGAGAACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 8
gtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
||  ||   || | || | |  ||   ||   | |    ||    | | | |   || | || ||||  |      |||| ||||| ||||| ||  |||| || ||||||||||| ||||| || ||||| |||||||| || ||||||||||| || |||||||| |||||||| |
gtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaacttt-ttttttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G438355_T01 (Zea mays), 3'ss of exon 2
----------------------------------------------------------gtgagcttcatat-----aactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                                          |  | |  |||||        | || |   ||  |||||| |   | | |   ||||   | |||  |    | | | |||||||||| ||||||||||  ||  |||||| ||  | |||||||| |||||||| ||||||||||| || | |||||| |||||||||||  |  | | ||
gtaagttatagtagtgttgtgattcatgtacattttctacttatttcaattgtactaggacaccaccatatttgtagtttgttgtcaattccatattgatgcatactttcttgctcatt-tatcatgccctagtttttagGTTGATGGCATGCTGGGAAGGCAGGAGAACCCTAGAGAACATGAAGCCATGCGGAAGATGAAAAATGAGTCTATGGTGAACTGGGATGGTCTCAGAAGAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G354532_T01 (Zea mays), 3'ss of exon 2
gtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
||  ||   || | || | |  ||   ||   | |    ||    | | | |   ||   || ||||  |      |||| ||||| ||||| ||  |||| || ||||||||||| ||||| || ||||  |||||||| || ||||||||||| || |||||||| |||||||| |
gtatgcaagcacacaagtttactttagtaaccactaccggcacagtatataccaacttctttttttgactttctggagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCACAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G435582_T01 (Zea mays), 3'ss of exon 3
gtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgcta--tattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
||  ||   || | || | |  ||   ||   | |    ||    | | | |   ||   | || ||||  |      |||| ||||| ||||| ||  |||| || ||||||||||| ||||| || ||||| |||||||| || ||||||||||| || |||||||| |||| ||| |
gtatgcaagcacacaagtttactttagtaatcactaccggcacagtatataccaacttctttttttttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCACACTA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G052403_T01 (Zea mays), 3'ss of exon 14
gtgagctt-catataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
||  ||   || | |  |    ||  | | | | |||| |     | |   |   || |   |||||  |      |||| ||||| ||||| ||  |||| || ||||||||||| ||||| || ||||| |||||||| || ||||||||||| || ||||||||  ||||||| |
gtatgcaagcagacaggttacattagtaa-acactgttggtacagtgtacaccaactgt---ctttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGACTGCGCACTA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 3'ss of exon 6
gtgagc--ttcatataactctttttg-tttatata---ttgtttgcttcctctctgcttgctatattctttgtttggtct------tagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
|| |||  ||   | || | |||||  ||| |||    |  | |||| |        |   | ||    |||| |||  |      ||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||
gtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagt-taaaacttgtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 23
gtgagc--ttcatataactcttttt-gtttatata---ttgtttgcttcctctctgcttgctatattct----ttgtttggtct-tagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
|| |||  ||  ||||| | || || |||| |||    |     |||          |   |  |  ||    | | ||  | | ||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||
gtaagccttttgtataaatgttcttagtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 21
gtgagcttcatataactctttttgttta---tatattgtt-tgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
            |||  |||||     |   |||  |||| |  |   ||  ||  |   |  ||  | | || || | ||||||| |||||| |||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||||| || |||||||| || ||||| |
-----------gtaagccttttaaccaagggtattgtgttgtattgattcattgaatataactttactagctttgtttcagGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGA

upper sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA05G03270.1 (Glycine max), 3'ss of exon 19
gtgagcttcatataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
|| ||| |  | |||||   |  |  ||| | || | |  |   ||  ||  ||  |  ||  | | || || | ||||||| |||||| |||| || ||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||| |
gtaagcct--tttaact---taagggtat-tgttttgtattgattcattggatgtaactttactagctttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37186767|gb|CF606120.1|CF606120
EST:     TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAA                         GTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG
genomic: TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagcttca ... ttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG
EST: gi|110720420|gb|EE096327.1|EE096327
EST:     TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAA                         GTTGATAGCATGCTGGGCCGGAAGGAGAATCCAGGGGAACATGAGGCCATG
genomic: TTTTCTCACTTGCCAGTAAAATTGCTCCTAGTGTTGTATTTGTGGATGAAgtgagcttca ... ttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA
                                     ttctttgttt  CT-rich tract
                                 tatattctttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcttcatataactctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtcttagGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG