1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tattttcaattctcttgttattcaaccagaggcgttcgcaggtttagtaatcatgcctctctctcagtagattgatcactttgttgggctgggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTCAGCTCCCTGTGGCCCTCCAGTTAAGCATGCTGAAATAAGCATAAATCT
species | Vitis vinifera |
transcript | Vv15s0046g02200.t01 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTEST: gi|30321002|gb|CD004264.1|CD004264
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CTCTCCAGTTTGTTTGAGGGTACACCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTEST: gi|30320383|gb|CD003645.1|CD003645
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CTCTCCAGTTTGTTTGAGGGTACACCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTEST: gi|30320366|gb|CD003628.1|CD003628
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CTCTCCAGTTTGTTTGAGGGTACACCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTEST: gi|30329230|gb|CD012492.1|CD012492
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CTCTCCAGTTTGTTTGAGGGTNCCCCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGANTACAAGACTGCAAANCTTGCATCCAGACTEST: gi|110373393|gb|EC937624.1|EC937624
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTEST: gi|30320992|gb|CD004254.1|CD004254
genomic: CTCTCCAGTTTGTTTGAGGGTACCCCCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
EST: CCAGCATCCGGAAAGATGCACAAAG GTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
genomic: CCAGCATCCGGAAAGATGCACAAAGgtatcgtttt ... gggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACT
agtaatcatgcctctctctcagtagattgatcactttgttgggctgggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTCAGCTCCCTGTGGCCCTCCAGTTAAGCATGCTGAAATAAGCATAAATCT
gattgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttcaattctcttgttattcaaccagaggcgttcgcaggtttagtaatcatgcctctctctcagtagattgatcactttgttgggctgggatttcagGTTTATTCAGCTTAGAGAGGACTACAAGACTGCAAAACTTGCATCCAGACTCAGCTCCCTGTGGCCCTCCAGTTAAGCATGCTGAAATAAGCATAAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg