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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaagtttagtcagtgactcagcttacttcaatgtttgacatcagaatttttgtaataagtttcttatgtgtacttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG

Basic information

species Vitis vinifera
transcript Vv14s0060g01680.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 23
gtagaaagtttagtcagtgactcagcttacttcaatgt-ttgacatcagaatttttgtaata---agtttcttatgtgt-----acttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG
|||  | | ||    |   | |     || | |    | |||   ||| || | ||  |||    |  | |||||   |       ||||||||| | ||||||||||  ||  |||| |||||||| ||||||||||| || |||||||||||  ||||||||||||| |||| |||||||||||  ||||
gtaagaggattttctatctagtattggtattgctgcttgttgctgtcaaaaatattaaaatggagacatccttataaattaatttgttgcagTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACATTTTCTGATGGCAACACTGGGG

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 24
gtagaaagtttagtcagtgactcagcttacttcaatgtttgacatcagaatttttgtaataagtttcttatgtgtact-----tgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG
|||  || |||  ||    | | |     || |  || |||    || ||||        ||  | || ||   | |      |||||||| | || |||||||  || ||||| |||||||| ||||||||||| || |||||||||||  |||| |||||||| |||||||||| |||||| || |
gtatgaaatttcttccaatattgataaagctgc--tggttgctgacaaaattaaaaatgaaatgtgctaataaattcctttgctgcagTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGTGATGCCAACATTGGTG

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 24
gtagaaagtttagtcagt---gactcagcttacttcaatgtttgacatcagaatttttgtaataagtttcttatgtgt--acttgc---agTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG
|||  | | ||  ||  |   |  |  |  |  ||   ||||       | ||||    |    |  | |||||   |  ||||||   ||||| | ||||||||||  ||  |||| |||||||| ||||||||||| || |||||||||||  |||| |||||||| ||||| ||||||||||  ||||
gtaagaggatttttctatctagtattggtattattgcttgttgctgtcaaaaattaaaattgagacatccttataaatcaacttgctgcagTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTGCGATGGCAACACTGGGG

upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 24
gtagaaagtttagtcagtgactcagcttacttcaatgtttgacatcagaattt---ttgtaataagtttctta--tgtgtacttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG
|||  ||||||  || |  | | |  | |      || |||    || |||||    || |||| | |  | |  |   |   |||||||| | || |||||||  || ||||| |||||||| ||||||||||| || |||||||||||  |||| ||||| || |||||||||| |||||| || |
gtatgaagtttcttccgatattga--taaagctggtggttgctgacaaaatttaaaatgaaatatgctcataaattcctttgctgcagTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCGTATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCGACATTTTGTGATGCCAACATTGGCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383318|gb|EC947684.1|EC947684
EST:     CAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAG                         TGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCT
genomic: CAGTTGGCAACATATGATGCCTCAAAAATGGAGCGGATTCGTCAGgtagaaagtt ... gtacttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcaatgtttgacatcagaatttttgtaataagtttcttatgtgtacttgcagTGGATCCCACAAGATGGACTATCTGCGCCCATATCTTATGCAGCTTACTCTTGCAACAGTCAACTAATTTATGCTACTTTTTGTGATGGCAACATCGGGG
                    aatttttgtaataagt  TA-rich tract