Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgacttgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 21
------------------gtttgtgact--tgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
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gtatataattatttttgttcctgttactgatgccttttgtttgttccagtcctctatatattgagcaatggctcgcttggtcatgtcacataaat-ttaaaatttcagATATGTGGTTGAGAGAATGGATGGTGATCTGTGGGATAAAGTTCTTCAGCCTGAGAATGAATATAGAAGGCAACTCATTGACCAAGTGGTTTCGACCGCA
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 22
gtttgtgacttgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
||||||| ||| || || |||| || | | | | | |||| | ||| | | ||| | ||| ||||||||| ||||| ||||||||| |||||| ||||||||||||||| |||||||||||| || ||||| || || |||||||| || |||||||| |||
gtttgtgg--tgtatattt----atatttttttctctaagtaattatccttgg-attcaatgcttacatgcttatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATGCCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA14G06340.1 (Glycine max), 3'ss of exon 23
------gtttgtgacttgtttacttcccgatatattatcat--atgcatggattcatttggtacatggacgctacttacacatacttccattt------cagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
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ctgcacctccgtcactttagaggagctatatttgtgatccttaatacaccaaatcaatt--ttctttaatacaatgttcacatgcttatattgtgatgacagATATGTTGTTGAGAGAATGGATGGTGATTTGTGGGCTAAAGTTCTTGATCCTGATAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 23
------gtttgtgacttgtttacttcccgatatattatcat--atgcatggattca---tttggtacatggacgct-acttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
| || |||| | | || | | || | || || | ||| || || | || | || ||| ||| || || ||||||||| ||||| || |||||| |||| | |||| ||||||||||| ||||||||||| |||||||| || || |||||||| || ||||||||||||
agtacactccgtcactttagaggagctctatttgtggtccttaatccaccaaatcaattttctttaattcaacattcacatacttatattttgatgacagATATGTTGTTGAGAGAATGGATGGTGATTTGTGGGCTAAAGTTCTTGATCCTGATAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 22
gtttgtgacttgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
||||||| ||| || || || | || | | | ||| | |||| | ||| | | |||| | ||| ||||||||| ||||| ||||||||| |||||| ||||||||||||||| ||||||||||| || ||||| || || |||||||| || |||||||| |||
gtttgtgg--tgtatatttat--atttttttttctctaaatgattatccttgg-attcaatgcttacatgctcatattgggattacagATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 23
gtttgtgacttgt--ttacttcccgatata-ttatcatatgcatgg-attcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
|| || | |||||| | | || || | | || | | || ||| | | ||| ||| | ||| ||| || |||||||| || ||||||||| |||||| ||||| || ||||| || | |||||||||||||||||||| ||||| ||||| || |||||||||
----gtattttatcattacttacgaaaattcttgttactctcacaatggtgactttgtagtttgttaatac--acaagt-tttcaattgtagGTATGTAGTGGAGAGGATGGATGGTGATCTGTGGGATAAGGTTCTCGATGAAAACAATGATTATAGAAGACAGCTTATTGACCAAGTTGTGTCTACTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
tacttac putative branch site (score: 1)
cttccatttc putative PPT
attcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtgacttgtttacttcccgatatattatcatatgcatggattcatttggtacatggacgctacttacacatacttccatttcagATATGTAGTTGAAAGGATGGATTCTGATCTCTGGGAGAAAGTTCTTGACCCTGATAATGATTATAGAAGACAGCTCATTGATCAAGTAGTATCTACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA