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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcattatagttccttcaataaaatttattttttgagaagactgcttgcttattcttttgatttgatgtttctttttttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAG

Basic information

species Vitis vinifera
transcript Vv13s0064g00180.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00180.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA20G34020.1 (Glycine max), 3'ss of exon 24
gtattcattatagttccttcaataaaatttattttttgagaagactg---cttgcttattcttttgatttgatgtttcttt--ttttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAG
            ||   |   ||   | |||   |  ||  |   ||    || |||| ||||||    | |  | | |||  | | ||||||||||| | |||||| || |||||||||||||| |||||||||||||| || |||||
------------gtctgtcagatggcaattaacat--gaacatgttgggtttttcttactcttttatcctcacctatgtttcatgtcttctcagATGAACGTGATATGGACTTTGATCAATTTGGAATACTTATAAAAGTTAAATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031040|gb|FQ444867.1|FQ444867
EST:     CTTTAGTCGAAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCATTGG                         ATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
genomic: CTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGgtattcatta ... tttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
EST: gi|351032202|gb|FQ460459.1|FQ460459
EST:     CTTTAGTCGAAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCATTGG                         ATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
genomic: CTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGgtattcatta ... tttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
EST: gi|351031564|gb|FQ459821.1|FQ459821
EST:     CTTTAGTCGAAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCATTGG                         ATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
genomic: CTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGgtattcatta ... tttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
EST: gi|351037685|gb|FQ464126.1|FQ464126
EST:     CTTTAGTCGAAACTTCCAAGAGATGGCTGTTGCTGGAGAAGTTTCATTGG                         ATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT
genomic: CTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGgtattcatta ... tttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagaagactgcttgcttattcttttgatttgatgtttctttttttttctcagATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAG
                              tttgatgtttcttttt  CT-rich tract
                             atttgatgtttctttt  TA-rich tract