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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctttttctctaatcacattcactcctctgcttcttgctttcagtttcttatgatatttttttcttcttatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT

Basic information

species Vitis vinifera
transcript Vv09s0002g08370.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA15G00880.1 (Glycine max), 3'ss of exon 23
--gtactctttttctctaatcacattcactcctctgcttcttgctttcagtttcttatgatatttttttcttcttatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT
      || ||   |    |   ||     |      |  ||   || | | | || |  || | | |    |||   ||  ||||| | | ||| ||  |  | || |||||||| |||||||| ||||||||||||||||  ||  |||||||||| || ||||||||||| ||||||||||
gttagttcattaagttctgttttatgttaactgtaaataattaaattta-tcttttgtc-taatgtatgaaacttgaattgtagTGGTTCCCACGGGATTCATCAGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTAT

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA13G44420.1 (Glycine max), 3'ss of exon 24
gtactctttttctctaatcacattcactcctctgcttcttgctttcagtttcttatgatatttttttcttcttatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT
||    |  |||| |  | |  || |||    |   |  ||   |   | | || |  || | | |    |||   ||  ||||| | | ||| ||  |  | || |||||||| |||||||| ||||||||||||||||  ||  |||||||||| || ||||||||||| ||||||||||
gttagttcattctgtt-ttatgttgactg---taaataatgaaatttatcttttgtc-taatgtatgaaacttgagttgtagTGGTTCCCACGGGATTCATCAGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTAT

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA07G03180.1 (Glycine max), 3'ss of exon 22
gtactctttttctctaatcacattcactcctctgcttcttgctttcagtttcttatgatatttttttcttcttatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT
|||  | |    ||  ||    ||   |       ||| |  | | | ||| ||||   ||     |    | | || | ||||| | |  || ||  |  |||| ||||||||| ||||||| ||||||||||||||||  || ||||||||||| || ||||| |||||  |||||||||
gtaagcctcagttc--attgtgttgtgtaaataatttcat-ttataatttttttatcggataccaatgacatcaattgt-agTGGTTCCCGCGAGACTCATCTGCACCAATATCCTATGCAACTTTCTCATGTGATAGCCAGCTGGTATATGCCAGCTTTTTAGACGCAACAATCTGTGTAT

upper sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA08G22910.2 (Glycine max), 3'ss of exon 24
gtactctttttctctaatcacattcactcctctgcttcttgctttcagtttcttatgatatttttttcttcttatt--tttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT
       ||  |   | |   ||    | |     |  || | || |   | || | || |  |     |   ||   ||  ||||| | |  || ||  |  |||| ||||||||  ||||||| ||||||||||||||||  || |||| |||||| || |||||||||||  |||||||||
------gttagcctcagttcaatgtgttgcgtaaataatttcatttataatatttttatctgataccaatggcatcaattgtagTGGTTCCCGCGAGACTCATCTGCACCAATATCGTATGCAACTTTCTCATGTGATAGCCAGCTGGTATTTGCCAGCTTTTTAGATGCAACAATCTGTGTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822443|gb|FQ412707.1|FQ412707
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|351031457|gb|FQ446660.1|FQ446660
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|161717398|gb|FC068869.1|FC068869
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTATATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCCGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|349813140|gb|FQ411380.1|FQ411380
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|349829095|gb|FQ419627.1|FQ419627
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|110387196|gb|EC951846.1|EC951846
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|349826376|gb|FQ417873.1|FQ417873
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT
EST: gi|351048584|gb|FQ448858.1|FQ448858
EST:     AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAG                         TGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCAAGCAACCTTCTCATGT
genomic: AGACTCAGCTTGCCATTTACGAAGCAACAAAACTAGATTGTGTAAAGCAGgtactctttt ... tatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctctgcttcttgctttcagtttcttatgatatttttttcttcttatttttcagTGGGTTCAACGTGAAGCTGCTGCTCCAATATCCCATGCAACCTTCTCATGTGATAGCCTCCTAGTATATGCCAGTTTCTTAGATGCAACTGTCTGTGTAT
                               tatttttttcttctta  CT-rich tract
                     tttcttatgatatttt  TA-rich tract