1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagtgctctcaacccatagttctttaaattgcaactttctttagccacatggatacaggaatgactcattttgatgcatttcttccttgatgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGACTTTGTATGGATTGGTTACATCACAGTTTGGAGATATAACAGAAGAAC
species | Vitis vinifera |
transcript | Vv09s0002g05600.t01 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGEST: gi|110694286|gb|EE071258.1|EE071258
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGGAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGEST: gi|349828677|gb|FQ418412.1|FQ418412
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGGAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGEST: gi|18459064|gb|BM437342.1|BM437342
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGEST: gi|110699740|gb|EE077005.1|EE077005
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGGAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGEST: gi|33406125|gb|CF211752.1|CF211752
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
EST: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAAT AGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
genomic: CATTTTATGGATTGTGGAACCTCTTTTCAGGTTTTATAGTCCCACGAAATgtaagtgctc ... atgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGG
ccacatggatacaggaatgactcattttgatgcatttcttccttgatgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGACTTTGTATGGATTGGTTACATCACAGTTTGGAGATATAACAGAAGAAC
attttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctctcaacccatagttctttaaattgcaactttctttagccacatggatacaggaatgactcattttgatgcatttcttccttgatgaatacagAGAATACCCGTGTGGTGGAGATGGTACTATTGGATATGCCCAGTTTCATGGACTTTGTATGGATTGGTTACATCACAGTTTGGAGATATAACAGAAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC