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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgcttatgtattgatgatgcttaattaaattgtagtaactaatgttggtttgtgattagcttcattctccagcttgcttgatggttaatatctctatgcagATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAG

Basic information

species Vitis vinifera
transcript Vv07s0031g00470.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 3'ss of exon 24
gttttgcttatgtattgatgatgcttaattaaattgtagtaactaatgttggtttgtgattagcttcattctccagcttgcttgatggttaatatctctatgcagATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAG
                      | |   ||    |  |  ||  ||| |  | || |       | |  | || |  ||   | ||  |  || ||  | | |||||||||||||| || || ||||| |||||||| || ||||| || |||||||| ||  |||| || ||  | |||||||| |||||||||
----------------------gttccctttgcatagaaaaagaaatataagcttatttcgttatgctatgtctatattctcttattctggat-tccgtttacagATTCATCCTGTAGTTTCCCGTCTGTGTGCTTCGATCCAGGGCACCAGCCCAGCTCGCCTGGCTGAATGCCTTGGGCTTGATTCATCCAAG

upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GRMZM2G149802_T02 (Zea mays), 3'ss of exon 24
gttttgcttatgtattgatgatgcttaattaaattgtagtaactaatgttggtttgtgattagcttcattctc--cagcttgcttgatggttaatatctctatgcagATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAG
    | |||    ||||   || | | ||    ||   | |  ||  ||||  ||   ||  |||  | | |   |||  |   ||||  | |||  || |  ||||||||||||||| || |||||||| |||||||| |||||||| || || ||||| ||| |||| || ||| | || ||||| ||  | |||
---gttcttccccattg-caatacattatcccttttcggaagatacagttgtctttccatatgctataatatgtgcagtctttctgattctaaatgccttt--gcagATTCATCCTGTCGTTTCTCGTCTGTGTGCTTCCATTCAGGGCACTAGTCCAGCTCGTCTGGCTGAATGTCTGGGCCTTGATTCGGCTAAG

upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 25
gttttgcttatgtattgatgatgcttaattaaattgtagtaactaatgttggtttgtgattagcttcattctccagcttgcttgatggttaatatctctatgcagATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAG
      ||||| | ||  |      |||||      |  ||| | |   |||||    |  |  |||  |  || | |||  |  |   |  |  |||| |  |||| ||||||||||| || ||||| |||||  |||||||||| |||||||||| | |  | || ||||||||||||||||||||||| |||
----gtcttatattttagtagc---taatt------ttataaattacaatggtt----accaagttctgtaccctggttgagtattttctttttcctct-tatagATCCATCCTGTGGTATCACGTCTTTGTGCACCAATTCAGGGCACAAGCCCAGAAAGACTAGCTGATTGTTTAGGGCTTGACTCATCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttgtgattagcttcattctccagcttgcttgatggttaatatctctatgcagATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAG
                                    ggttaat  putative branch site (score: 4)
                                          tatctct  CT-rich tract
                                      ttaatatct  TA-rich tract