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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccatggatttgatccattcattttgacgttctccttccatgatttagagaagaattagtttttaagtttcatggctttcaaccctctcatttcccagcatggttaaggactaggcacaataggaggcatggaaattgaactctaaattaattcaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACACCACCTGCCACAACCTGGTCT

Basic information

species Vitis vinifera
transcript Vv07s0005g02440.t01
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA03G38430.2 (Glycine max), 3'ss of exon 11
gtatgccatggatttgatccattcattttgacgttctccttccatgatttagagaagaattagtttttaagtttcatggctttcaaccctctcatttcccagcatggttaaggactaggcacaataggaggcatggaaattgaactctaaattaattcaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACACCACCTGCCACAACCTGGTCT
                                                           |  ||||  ||||     | | || |  |||         |   ||  || |  | |     |  |  ||     | ||  |||    |||  | ||  |  ||   ||  |||||    |||||    ||||||||||||||| ||| ||||| | | | |||||||| ||||||||| | |||||||||||||  |||||||| || |||||||
----------------------------------------------------------gtgtgtttcaaagt-----gacgttaatgccttggg-----cgaaattattcactatttattgctctcagaaaagagtaatctga----taagctgatatatctt---atcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCT

upper sequence: Vv07s0005g02440.t01 (Vitis vinifera), 3'ss of exon 23
lower sequence: GLYMA19G41030.1 (Glycine max), 3'ss of exon 11
gtatgccatggatttgatccattcattttgacgttctccttccatgatttagagaagaattagtttttaagtttcatggctttcaaccctctcatttcccagcatggttaaggactaggcacaataggaggcatggaaattgaactctaaattaattcaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACACCACCTGCCACAACCTGGTCT
                                                                 | ||||    |  |   | ||  |  |   |       ||  || |  | |        |   |     |  |  |||    |||  | ||  |  ||   ||  |||||   ||||||    ||||||||||||||| ||| ||||| | | | |||||||| ||||||||| | |||||||||||||  || ||||| || |||||||
----------------------------------------------------------------gtctaagacaaagtgacattaatgccttgggt----gaaattattcactatttattgttctcataaaagagtcatctga----taagctgatgtatctt---atcctgcagCCAATTGCAATTGCTGTTGGAGACTGGTTTTTTGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACATGCCATAATCTGGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaataggaggcatggaaattgaactctaaattaattcaattttcaatattgcagAAGATTGCAGAGTCTGTTGGAGACTGGTATTTCGATCGAAGACCCGTCAAAGCCATCGACTGTCCATACCCCTGTGACACCACCTGCCACAACCTGGTCT
                             aattaat  putative branch site (score: 3)
                aaattgaactctaaat  TA-rich tract