Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcttccaaatgaatacttttatgggaaacatgctccctttaggatgattgcaattttcctttgagacttaaaattatcagctgcagatctgtgtaagcaaacttcatgtctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAGAACTTTAATTGGCATTGCTTGTGTTTCATCATCACCATTTCGCTCCATA

Basic information

species Vitis vinifera
transcript Vv06s0004g03700.t01
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30324238|gb|CD007500.1|CD007500
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
EST: gi|26266772|gb|CA817835.1|CA817835
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
EST: gi|110731676|gb|EE106306.1|EE106306
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
EST: gi|26264854|gb|CA815917.1|CA815917
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
EST: gi|30323137|gb|CD006399.1|CD006399
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
EST: gi|351036173|gb|FQ464018.1|FQ464018
EST:     CATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAAAG                         GAAAACATA-TGAGAGGAAGTGGAGA
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAA-CATAATGAGAGGAAGTGGAGA
EST: gi|30251622|gb|CB969355.1|CB969355
EST:     AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAG                         GAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG
genomic: AATCTGTGGATCCTGAACTCCTGGATCTACAAACAAATATTTTCTAAGAGgtaactcttc ... tctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacttaaaattatcagctgcagatctgtgtaagcaaacttcatgtctcatccagGAAACATAATGAGAGGAAGTGGAGAACTCTTCTTGTTGCTGGGTCAAGTAGAACTTTAATTGGCATTGCTTGTGTTTCATCATCACCATTTCGCTCCATA
                                             tctcatcc  CT-rich tract
     taaaattatca  TA-rich tract