1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...aaaataaaaaaactgcttatacgaactgcagagtgaagtttttagcattaccactttctacaatgcccttttggtcattgtgttcctttttcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGCAGATCCCTGATGAGGGTCCACCACTGTCAGACATCCGAATCCAGTTTC
species | Vitis vinifera |
transcript | Vv04s0008g06330.t01 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAG ATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGEST: gi|110724669|gb|EE100697.1|EE100697
genomic: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAGgctagtattt ... tcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATG
EST: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAAGAGCAGATGCTCAG ATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGEST: gi|26258797|gb|CA809860.1|CA809860
genomic: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAGgctagtattt ... tcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATG
EST: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAG ATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATG
genomic: CCTTCTCAGAGGTTCTGAATGTACTTGTTTCATCAGGAGCAGATGCTCAGgctagtattt ... tcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATG
cattaccactttctacaatgcccttttggtcattgtgttcctttttcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGCAGATCCCTGATGAGGGTCCACCACTGTCAGACATCCGAATCCAGTTTC
tcattgtgttcctttt CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaataaaaaaactgcttatacgaactgcagagtgaagtttttagcattaccactttctacaatgcccttttggtcattgtgttcctttttcttctccagATTGTTGTGTGGAATTATGATGGATGGGAAAGGGTGAACAGCAGATCCATGCAGATCCCTGATGAGGGTCCACCACTGTCAGACATCCGAATCCAGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - -aaaaaaa
- - - - - - ctgctta
- - - - - - - - - - - - actgcag
- - - - - - - - - - - - - - - - - - - - - - -cattacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttttgg