Sequence
atgc intronic sequence ATGC exonic sequencegtaagtactctataacttcatcccaccaatgacttgttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 23
----gtaagtactctataacttcatcccaccaatgacttgttcc-tccaaatttt---ctgattttggtt-aatggttcttgtact-cttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
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ttctgtt-gtgttacagaagtaaattttattatgttctagccacattcagactttgtattaatcttcttccaactaatcatgttttgttttattctgccagACAATTGCAGAGAAGTTGGGTGTGGAGCGAGACAACAGGTCAAACTTCAAGGCCGATTATGGCCGCTTCTCAACTAATGTCAAAGGGGTGTTTGCAGCCG
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 22
--------------------------------------gtaagtact--ctataacttcatcccaccaatgacttgttcc----tccaaattttctgattttggttaatggtt----cttgtactcttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
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gtaagtattcataatagcttcatctctttatgtttacagaatgtggtagttgagaagaagttgcaacaataaattgaattgaaatgtccattattaggaagtggctaatgattgatatttctgctctt-ggttttgcagACAATTGCAGAGAAGTTGGGTATAGAGCGAGACAATAGGTCAAACTTCAAGGCAGAGTATGGTCGCTTCTCAACCAGTCTTAAAGGGGTGTTTGCAGCTG
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA06G13280.2 (Glycine max), 3'ss of exon 22
--------------------------------------------------------------------------------------------gtaagtactctataacttcatcccaccaatgacttgttcctccaaattttct-gattttggttaatggtt---cttgtactcttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
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gtaagtattcatgatagcttcatctcttagttgttaaccgaatgtggtatttgtctctactgcttgttggtggttgaaaagtcgaaagaaatgaaaagatgctaaaagaa-gttgaaacaataaattaaattgaaatgtccattaggaagtggctaatgactgatctttttgctcttggtcttgcagACAATTGCAGAGAAGTTGGGTATTGAGCGAGACAACAGGTCAAACTTCAAGGCAGAGTATGGTCGTTTCTCAACCAGTCTTAAAGGGGTGTTTGCAGCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110395579|gb|EC961246.1|EC961246EST: TTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGCG ACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTGAAG
genomic: TTGAGGCTGACCTCGTTCTGCTAGCCATGGGATTCCTTGGCCCTGAGGTGgtaagtactc ... aaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
ctcttca CT-rich tract
aaattttctgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtactctataacttcatcccaccaatgacttgttcctccaaattttctgattttggttaatggttcttgtactcttcaaacttccagACAGTAGCAGAGAAGCTGGGGTTGGAGCGAGACAACCGATCAAACTTAAAGGCAGATTATGGCCGCTTTGCAACCAGCGTGGAAGGGGTCTTTGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG