Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccttttcttttttcttcttctggctacatttttaatagctctttttgtttttctctttaatgttatctgacactcttgactgcaatctttcagATGATAAATCCAAATGAACCATATTGTAGTATCTATAATGAAGTAACAAGCTCAACAAGGGCTACCAAATTAAAGGGTTCAGAGCCTGTTATTGTTGACT

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 17
gttagccttttcttttttcttcttctggctacatttttaatagctctttttgtttttctctttaatgttatctgacac--tcttgactgcaatctttcagATGATAAATCCAAATGAACCATATTGTAGTATCTATAATGAAGTAACAAGCTCAACAAGGGCTACCAAATTAAAGGGTTCAGAGCCTGTTATTGTTGACT
          | || |  |||  ||      |      | || ||  | |||       ||| ||| || || || |   | ||||       |||||||||||||   ||| ||||||| |||||||| || ||||||||||||||||| || | |    |    |||  ||||||||| ||  |||||  ||||||||
---------gtattatgcctttatcccctccctcccccagtaccttctcttga------cttcaattttgtcagaaaaaattttgatgtttgactttcagATGATACGGCCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCCATACACACCTTAAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACT

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 26
gttagccttttcttttttcttcttctggctacatttttaatagctctttttgtttttctctttaatgttatctgacactcttgactgca-atctttcagATGATAAATCCAAATGAACCATATTGTAGTATCTATAATGAAGTAACAAGCTCAACAAGGGCTACCAAATTAAAGGGTTCAGAGCCTGTTATTGTTGACT
                    | || |  |  | | |     | ||  | |     ||  ||| ||| || || |  |    | | ||||   |||||||||||||   ||| ||||||| |||||||| || ||||||||||||||||| || | |    |    |||  ||||||||| ||  |||||  ||||||||
-------------------gtattatacccccctctcccccatcttatctc----ttgacttcaattttgtccggaaaatcttaatgcatgactttcagATGATACGGCCAGATGAACCCTATTGTAGCATTTATAATGAAGTAACAAGTTCCATACACACCTTAAAAAGAAAGGGTTCTGAAGCTGTTTATGTTGACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttgtttttctctttaatgttatctgacactcttgactgcaatctttcagATGATAAATCCAAATGAACCATATTGTAGTATCTATAATGAAGTAACAAGCTCAACAAGGGCTACCAAATTAAAGGGTTCAGAGCCTGTTATTGTTGACT
                                   tcttgac  putative branch site (score: 3)
                                               tctttc  putative PPT
         tttttctctttaat  TA-rich tract