Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcacgtatgctatttttgggttcttcattgtcaactaaggtcaaccggtcttatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG

Basic information

species Vitis vinifera
transcript Vv13s0067g01920.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 14
gtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG
||| | |  | |||| ||| ||  || ||||   | |   ||||   | ||| | ||| | | ||||   | |   | | | | |||||| |||| || ||  |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || ||||||
gttggtagttgtgctgtttctg--tttttcaagctgagggaaggaattaaactgatctctctgtttttcatatttgtatttcttagCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAG

upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 20
gtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG
||| | |  | |||| ||| ||  || ||||     |   ||||   | ||| | ||| | | ||||   | |   |   | | |||||  |||| || ||  |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || || |||
gttggtagttgtgctgtttctg--ttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351036060|gb|FQ463905.1|FQ463905
EST:     TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAG                         CCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC
genomic: TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgt ... tgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC
EST: gi|351026572|gb|FQ432470.1|FQ432470
EST:     TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAG                         CCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTACACATATGCC
genomic: TTAATTGGGTTGATGAGGGATCTTCGAGGAATTGCAATGGCAACAAATAGgtttgcacgt ... tgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgtcaactaaggtcaaccggtcttatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG
                                             tgtctttc  CT-rich tract
                         tcttatatttt  TA-rich tract