Sequence
atgc intronic sequence ATGC exonic sequencegtgatgtgtccctaccatatgccctgttcgggttcactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 22
-----------------------------gtgat-gtgtccctaccatatgccc-tgttcgggttcactttctttttacttcaattgct-----tatgctttgcatgtggtttt-cagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| | ||| ||| | | | || | |||||| || ||||| || ||| || | |||| ||| || || || || | || || || || |||||||| | ||||| ||||| ||||||||||| ||||| || |||||||| || |||||||| || |||
gtatgattctttatattatcttgtattccacaaccagattaagggcatgtgcacacgcacacaaacatatgcttttttgttttgttgctgacctcatcttttatatttcttttttcagGAACCGCCTACGGCTGCTGACACAATTTTTGGAGCACTTAGTGAGCGAGGGTAGCCAAGATGTCCATGTGCACAATGCTCTTGGAAAAATCATCATTGAC
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 22
------------------------------gtgatgtgtccctaccatatgccc-tgttcgggttcactttctttttacttcaattgct-----tatgctttgcatgtggtttt-cagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| | ||| ||| | || | || | |||||| || ||||| || ||| || | |||| ||| || || || || | || || || || |||||||| | ||||| ||||| ||||||||||| ||||| || |||||||| || |||||||| || |||
gtatgattctttatattatcttgtattccacagccagcttaagggcatgtgcacatgcacacaaacatatgcttttttgtttcgttgctgatctcatcttttatatttcttttttcagGAACCGCCTACGGCTGCTGACACAATTTTTGGAGCACTTAGTGAGCGAGGGTAGCCAAGATGTCCATGTGCACAATGCTCTTGGAAAAATCATCATTGAC
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G057576_T01 (Zea mays), 3'ss of exon 21
------gtgatgtgtccctaccatatgccctgtt-cgggtt---cactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| | | | ||| | ||| || | ||| || | ||||||| | || | | || |||| || || | |||| || || || || || || ||||| |||||||||||||| |||||||| || |||||||||||||||||||| |||||||| || |||||||| || |||
gtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctg-tttgaatatgtgtatcagGAACCGCCTACGGTTGCTTACTCAATTCTTGGAGCATCTAGTGAGTGAAGGTAGCCAAGATGTGCATGTCCACAATGCTCTTGGGAAAATCATCATCGAC
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G111355_T02 (Zea mays), 3'ss of exon 2
gtgatgtgtccctaccatatgccctgttcgg--gttcactttctt---tttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAA-ATCATTATAGAC-----------------------
| ||| | || ||| ||| ||||| | | || | || ||| ||| || | ||||| | | | || | || |||||| | | | | || ||| | | | | | || | |||||||| || | | | |
---gtttgtttttcatatcctcccagtttacttattcacatgagtgaaggtagccaagatgtgcatgtccataatgctcttggta-aaatcatcattgacagCAACAACAATCCT--GAGCATTTCCTTACTACC--AACCCAT----TTTACGACTCTCGTGTTGTGGGTAAATATTGTGAAAAGCGGGATCCTACACTTGCTGTTGTT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 22
gtgatgtgtccct--accatatgccctgttcgggttcactttctttttacttcaattg-cttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
||| | || || | | | || | | || | || | ||| | || ||| || | | || || | || | | ||| ||||| || ||||| ||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| || || ||
gtgtt-tgccctttgatcctaagtgttatt--gctttgcgttcgtgtttcttattttatcctgtggctt---tttgatatgcagGAATCGGCTTCGTTTGCTCACACAGTTCTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGAT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 21
gtgatgtgtccctaccatatgccctgttcgggttcactttctttttact--tcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
|| | | | | | || | || || || || || | | | | | |||| | || || | ||| ||||| || ||||| ||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||
gtagtatctgttctcta-atccttcattactttttgtgctcacatttctgattattctgtggtacttttcttg--gtatgcagGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGAT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA14G06340.1 (Glycine max), 3'ss of exon 22
gtgatgtgtccct----accatatgccctgttcgggttcactttctttttacttcaattg-cttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
||| ||| | || | | |||| | || | || | ||||| || ||| || | | || || | || | | ||| |||||||| ||| | ||||| ||||||||||| || ||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| || || ||
gtggtgttttccctttgatcctatgtgttatt--gctttgcattcttgtttcttattttatcctgtgtctt---tttgatatgcagGAATCGACTTCGTATGCTCACACAGTTCTTGGAACACCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGAT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 22
gtgatgtgtccct-accatatgccctgttcgggttcactttctttttacttcaattg-cttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
||| | | | | | | |||| | || | || | ||||| || ||| || | | || || | || | | ||| |||||||| ||| | ||||| ||||||||||| || ||||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| || || ||
gtgttttccctttgatcctatgtgttatt--gctttgcattcttgtttcttattttatcctgtgtctt---tttgatatgcagGAATCGACTTCGTATGCTCACACAGTTCTTGGAACACCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATTATCATTGAT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 21
gtgatgtgtccctaccatatgccctgttcgggttcactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| || || | | || ||| ||| ||| | | | | | | | | | | | ||| | ||| ||||| || ||||| || || ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||
--gtagtatcttttctcta-atcctacat---ttctttttgtgctcgcatttctgattattccgtggtacttggcatgcagGAATCGGCTTCGTTTGCTTACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGAT
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 22
----gtgatgtgtccctaccatatgccctgttcgggttcactttctttt-tacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| | | | | | |||| | | | |||| | ||| | || || | | |||| || ||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
gtgcgaacccttttagcatcttgaatttcgttcatatgtatgctattttgttctttaggctctaata-tgtatatgtc-ttctcagAAATCGACTCCGTCTCCTCACTCAGTTCTTGGAGCATCTAGTTAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCCTTGGGTAAAATTATCATAGAC
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 22
gtgatgtgtccctaccatatgccctgttcgggttcac-----tttctttttacttcaattgcttatgctttgcatgtggtttt-cagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
|| ||| | | || ||| | ||||| | ||| |||| ||| | | | || | || |||| |||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
---gtgaatccttttggtcatcctggtttgcgttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcagAAATCGACTCCGTCTCCTCACTCAGTTCTTGGAGCATTTAGTTAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCCTTGGGTAAAATTATCATAGAC
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 3'ss of exon 22
---------------------gtgatgtgtccctaccatatgccctgttcgggttcactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
| | |||| || | | | | || | || | || | || ||| ||| || ||||| || ||||| || || | | || || ||||| |||||| | || ||||| || ||||||||||||||||| || |||||||| || || ||||| |||||
atattagaactaggttgcgtttttaaatgtctaaacattttagtgtcacgatttaaacatcctgacgtcgtcgagaactgatgagttg--tggggtttatagGAATCGTCTGCGACTGTTGACACAATTCTTAGAGCATTTGGTAAGTGAAGGTAGCCAAGATGTGCATGTGCACAATGCTCTTGGGAAGATCATCATAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgggttcactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
ttttc CT-rich tract
tttttacttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatgtgtccctaccatatgccctgttcgggttcactttctttttacttcaattgcttatgctttgcatgtggttttcagAAATCGACTCCGTTTACTCACTCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAAGATGTGCATGTCCATAATGCTCTGGGTAAAATCATTATAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG