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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAAC

Basic information

species Vitis vinifera
transcript Vv12s0034g02360.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA03G03120.2 (Glycine max), 3'ss of exon 23
gtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAAC
||||||   |||   | ||| |    ||||| |     |  | || || | ||| |  |   |   | | | || ||||   ||    ||   |   || ||| ||| | |||||||| | ||   |     ||||||||||||||||||| ||  |||| || |||||||| ||||||||||| ||||||||||||||||| || |||||||| || ||||| || || ||||
gtaagt--taccttttagacattttgttact-gttgctctctaacatcgatattgtgccagttccgaatctgttaatgttggcacactctgcccaagtttcttactcga-atttccttcatttggat----tagAAAGTTGAAAACAGAGTGAGTGTACTTAGCGACTTGAGGGAGCTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTCGAAC

upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: AT1G71820.1 (Arabidopsis thaliana), 3'ss of exon 23
gtaagtgccaccaccttgacttaagtttactcgaaatacagttacctcaacattttttctagtataattttcttgatgtattcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAAC
                     ||||||   |  |    || ||| ||||   ||||  |  | ||||||||       ||||  | ||   |  | ||||        ||||||||        ||||||||||||||| || | |||| |||| ||| |||| ||  ||||||| ||||| ||||||||||| || ||| |||| |||||| | ||| | || ||||| || |
--------------------gtaagttggtttcag---cacttaactcat--ttttaacctgaataatttt------atatttctttgaagtattgctta--------atatttccactggaactgtgttacagAAAGTGGAGAGCAGAATCAGAATAATGAGCGATCTGAGAGAACTTGCATCTGCAGAGAGTCTAGATGCATTTACACTCGTGTACTCGAATATTCTAGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatctgctatgcttcttacttcctccatatttccttgacttatgtgttacagAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCTGCAGAGAGCCTGGATACATTCACACTCATATACACAAACATTCTTGAAC
                             atattt  TA-rich tract