Sequence
atgc intronic sequence ATGC exonic sequencegtttgtatcactggaaacttataactttgtcaacaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA01G30320.1 (Glycine max), 3'ss of exon 25
gtttgtatcactggaaac-ttataactttgtcaacaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
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gtgtgttttgtggaaattgttttatatatttggaatgcatgttcaact--tatttgatctcacaa--gacaaatgatgttccctgcagGTTGAGCAGATTCCTCCTCCTTTACTGTTCATGCGTACAGTATTACAAGCAATTGGTGCTTTTCCGACACTG
upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA03G07790.2 (Glycine max), 3'ss of exon 22
gtttgtatcac-tggaaacttataactttgtcaacaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG----------------------------
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--gtgtgttatgtggaaattgttttatatatttggaatgcgtattcaacttagttgatctcacaa--ggcaaatgatcttccttgcagGTTGAGCAGATTCCTCCTCCTTTACTGTTCATGCGTACTGTATTACAAGCAATTGGTGCTTTTCCAACACTGGTAAGAAGCTTACTTATCCTGGAAAATG
upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA03G07790.1 (Glycine max), 3'ss of exon 22
gtttgtatcac-tggaaacttataactttgtcaacaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
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--gtgtgttatgtggaaattgttttatatatttggaatgcgtattcaacttagttgatctcacaa--ggcaaatgatcttccttgcagGTTGAGCAGATTCCTCCTCCTTTACTGTTCATGCGTACTGTATTACAAGCAATTGGTGCTTTTCCAACACTG
upper sequence: Vv08s0105g00330.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: AT5G01400.1 (Arabidopsis thaliana), 3'ss of exon 22
----------gtttgtatc--actggaaa---cttataactttgtcaacaacacctttaa-ctactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
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gtatataacaatctccatcgtactgagtatttcttctattcatgttttgatttcttttcttcttctggacattttttctcattggcgagtttttggctg-cagGTCCAGCAAATTCCACTGCCAATGTTATTCATGCGTACAGTTTTACAAGCTATTGGTGCTTTTCCAGCTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
ctttaac putative branch site (score: 3)
ttcccatc putative PPT
tttaacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtatcactggaaacttataactttgtcaacaacacctttaactactacttgaattcacaaatgaccaagaatgttcccatcagGTTGAGCAGATTCCTCTTCCCTTATTATTCATGCGTACAGTACTACAAGCTATAGGTGCTTTTCCTGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT