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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttatttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttaccttgtcttgcttggctgtttgactgtctttctccagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCCTACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 22
gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttatttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttaccttgtcttgcttggctgt--ttgactgtctttctccagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCC-TACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG
                                                            | | |     |  |   |    |||   | ||   || | ||  |   | |     |||  |||    ||| ||  | |  |    ||||  |  || |    | ||     |||    | |  ||   | |     | |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||  ||||  ||  || |||||||| ||||| || || ||||| ||  | || |
-----------------------------------------------------------gtaaatcctccctcctctttg--tgcacatcttctgtatttcttgtggtttt-----aattgttagagcagccaattttttagaactatatgggattatttgagctttacagagctccctttttgttatttatgcaattacagATTGTAAGTGCATCTCAAGCTGGAGACATTCAGTTCCTTGATGTTAGAAG-GGCATCTGAACCCTACCTCACTATTGAAGCACATAGGGGTTCATTAACGG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 21
gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttatttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttaccttgtcttgcttggctgtt--tgactgtctttctccagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCC-TACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG
                                                            | | |     |    | |     ||   | ||   || | ||  |   | |     |||  |||    ||| ||  | |  |     |||  |  || |    | ||     |||    | ||  |   | |     | |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||  ||||  ||  || |||||||| ||||| || || ||||| ||  | |  |
-----------------------------------------------------------gtaaatcctccctctttgt-----gcacatcttctgtatttcttgtagtttt-----aattgttagagcagccaattttttagaactttatgggattatttgagctttacagagctccctttttgttatttatgcaattacagATTGTAAGTGCATCTCAAGCTGGAGACATTCAGTTCCTTGATGTTAGAAG-GGCATCTGAACCCTACCTCACTATTGAAGCACATAGGGGTTCATTAATGG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G460090_T01 (Zea mays), 3'ss of exon 13
gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttat-ttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttaccttgtcttgcttggctgtttgactgtctttctccagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCC-TACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG
                                                                     | |     |   ||    ||   ||| || ||||   |||  |    ||   | |  | ||    | | ||   || | | |    ||    ||||   |      || |    ||   | |  |    |||||||| ||||||||||| ||||| ||||||||||| |||||||| |||| |||||   |  || ||||| || ||||| || |||||||| || ||||| |
---------------------------------------------------------------------gtaaatagttccatttctttgcattgctattcctgtcttcattgttgaagctactgatctattctatagctgtttgggctttcctaat--ctttacaacgctcccttttgta--ttatttatggtatcacagATTGTAAGTGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAA-TGGCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 16
gtaaatggagcagcatgatggttacgtgcccttcttttttctggtgaaaatttgggtttatgattttctgcagcctatcaaatgcggttatttgatagtcctcatttctcttgaaaaatcattattatagcaaacatctaggtgtgatatatgtatagtcttac----cttgtcttgcttgg--ctgtttgactgtctttctc-cagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCC-TACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG
                                                                             | | ||   |   |   ||  ||   ||||   |||   || ||  | || ||  |   ||| ||  || | |   |  ||  ||||    ||    ||| ||||  || |||   | |   | |  |||||||| || |||||||| ||||| ||||||||||| |||||||| ||||  | ||   |  || ||||| || ||||| || |||||||| || ||||| |
----------------------------------------------------------------------------gtaacatcttgcattactatgttctatattttcattgttgaagca--acta-agttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacagATTGTAAGCGCATCTCAAGCTGGAGACATTCAGTTTCTTGATGTTAGAAG-GTCAGCAGAACCCTACCTGACTATTGAGGCACACAGGGGTTCACTTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatatgtatagtcttaccttgtcttgcttggctgtttgactgtctttctccagATTGTGAGTGCATCTCAGGCTGGTGACATTCAGTTCCTTGATGTGAGAAATGGCAATTGTGCCTACCTCACAATTGATGCTCACAGGGGCTCTCTTACTG
                                         ctgtctttctcc  CT-rich tract
     atgtata  TA-rich tract