1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtgagtagttgaaatttatatgatgctggctgttaattcatttttgagcaagacttttcctaggcgatgactgtaacggttttgtcttcaatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAGGCAGCCTGGATGGTTTG
species | Vitis vinifera |
transcript | Vv07s0005g00770.t01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTG GCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAEST: gi|110361766|gb|EC925263.1|EC925263
genomic: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTGgtgagtagtt ... caatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAA
EST: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTG GCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAEST: gi|22012182|gb|BQ797216.1|BQ797216
genomic: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTGgtgagtagtt ... caatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAA
EST: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTG GCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAEST: gi|34551036|gb|CF519236.1|CF519236
genomic: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTGgtgagtagtt ... caatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAA
EST: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTG GCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAA
genomic: AGGTCACAGCAGCATTGGCATCGGTGGGAATTACCATAATTTCCTGTGTGgtgagtagtt ... caatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAA
ttgagcaagacttttcctaggcgatgactgtaacggttttgtcttcaatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAGGCAGCCTGGATGGTTTG
ctgtaac putative branch site (score: 3)
ttttgtcttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagttgaaatttatatgatgctggctgttaattcatttttgagcaagacttttcctaggcgatgactgtaacggttttgtcttcaatgagcagGCTGAGATGGATAGAGGAAGGGGATTGGCTGTCATGTTATTCCATGTTGAAGGCAGCCTGGATGGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG