1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ttaggcctagttcaagcacttgatctatagctaatatgaaattcttattttgagattgatgctctggaaaatgacattttgaagttattttttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCATCAAAAGAAATTGTTCGTTTGAAAAAGTTGGTTGCATACTGGAAGGAA
species | Vitis vinifera |
transcript | Vv04s0044g02020.t01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|71880280|gb|DT029335.1|DT029335
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAEST: gi|30252337|gb|CB969888.1|CB969888
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTA
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATTTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|110361383|gb|EC924851.1|EC924851
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|110422405|gb|EC988728.1|EC988728
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|30252330|gb|CB969881.1|CB969881
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|30252250|gb|CB969801.1|CB969801
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCEST: gi|110419545|gb|EC985782.1|EC985782
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
EST: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGAC GTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
genomic: AACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttc ... tttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTC
tattttgagattgatgctctggaaaatgacattttgaagttattttttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCATCAAAAGAAATTGTTCGTTTGAAAAAGTTGGTTGCATACTGGAAGGAA
gattgat putative branch site (score: 4)
ttattttttttatc putative PPT
aaaatgacattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggcctagttcaagcacttgatctatagctaatatgaaattcttattttgagattgatgctctggaaaatgacattttgaagttattttttttatcagGTATGCATCTAGGGTCCGGTCAATTGTAAATGATGCAAGCAAAAATGTTTCATCAAAAGAAATTGTTCGTTTGAAAAAGTTGGTTGCATACTGGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - -tcaagca
- - - - - - - - - - - - - - - - aatatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaat