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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaaagatttttgctgtatttttttaatccctttgttttactaggccagaaactcaaagttgtgctttgctgtgtcaatataaaactggttgttttgaccttgtttttttttcctttttcaaactttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA14G11220.2 (Glycine max), 3'ss of exon 22
gttaaaagatttttgctgtatttttttaatccctttgttttactaggccagaaactcaaagttgtgctttgctgtgtcaatataaaactggttgttttgaccttgtttttttttcctttttcaa--actttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
                                                                           || |        |      ||||||| |||| |||   |        |     | |  | | ||  ||||||||   ||||||||||||||||| ||||||||||||||| ||||||| | ||  ||||| |||   |||| |||  |||||||||
---------------------------------------------------------------------------gtgagggagggtcattcacttttgacattgtctttaactttaaaacaagttgttcttgattcatacaaccttttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTGCTCGTCCTTCAGAGCGAG

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA06G05900.1 (Glycine max), 3'ss of exon 23
gttaaaagatttttgctgtatttttttaatccctttgttttactaggcca--gaaactcaaagttgtgctttgctgtgtcaatataaaactggttgttttgaccttgtttttttttcctttttcaaactttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
                                           ||||  |   | | | ||| ||   ||||| ||   | || |    |   |   | |    ||   |     |  ||| |   | |||  | | || |||||||||   |||||||| |||||||||||||||||||||||| |||||||   ||   | ||||||  | |  |  | ||||||||||
-----------------------------------------gttaggttatttacagttaaacttagcctttgttgctactatttttt-caactcaatgtagttttccatcagcgtgttttcttgcatttt-gattaatataaccttttatgtgcagTTTTATTGGAAATCCTGGTCTTTGTGGTGATTGGCTGGATTTGTCTTGTCATGGGTCAAACTCTACAGAGCGAG

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA17G34380.2 (Glycine max), 3'ss of exon 21
gttaaaagatttttgctgtatttttttaatccctttgttttactaggccagaaactcaaagttgtgctttgctgtgtcaatataaaactggttgttttgaccttgtttttttttcc---tttttcaaactttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
                                                                         |||  | |     | || |    ||| | ||   |||     |    | |||    ||   |   ||  ||||||||   ||||||||||||||||| ||||||||||||||| ||||||| | ||  || ||||||   ||||  ||  |||||||||
-------------------------------------------------------------------------gtgagagtcattcattgttgacattgtctttaactttaaaagcaagctgttctggattc--atgaatacaaccttttatttgcagTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAG

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA04G05910.1 (Glycine max), 3'ss of exon 14
gttaaaagatttttgctgtatttttttaatccctttgttttactaggccagaaactcaaagttgtgctttgctgt-gtcaatataaaactggttgttttgaccttgtttttttttcct---ttttcaaactttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
                                           ||||  |     | | ||||   ||| ||  | ||   ||  |   |  |    |  || | ||||| | |       |||||     ||  | |||||||||||||    |||||||| ||||||||||||||||||||||   |||||||   |||  | |||| |  | ||||  | ||||||||||
-----------------------------------------gttaggtta----tttacagttaaacttagccattgttgctactattttt-tcaactcaacgtagttttctatcagcatgttttcttggatttgaatgatgtaacctttcatttgcagTTTTATTGGAAATCCTGGTCTTTGTGTCGATTGGCTGGATTCGTCTTGTCTTGGGTCTCACTCTACAGAGCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtttttttttcctttttcaaactttcaactgatgtaacctttttcatgcagTTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAG
                                   atgtaac  putative branch site (score: 3)
                                         cctttttcat  CT-rich tract
     tttttttttccttttt  TA-rich tract