Sequence
atgc intronic sequence ATGC exonic sequencegtaataaattcatttcactaactgaaaaatattttttaggtattggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os04g59494.1 (Oryza sativa), 3'ss of exon 22
gtaataaattcatttcactaactgaaaaatattttttaggtattg-gtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
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------------------------gtaagtattttctatctggtatagtataacatctcggattcactcctcacattatgttgttgctgcagAACCCGCAATGTGTGAAGGAGGCTGTGTCAGTGGCTAACAACGCCTGTTGGGCAATTGGAGAATTAGCAATCAAG
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G376731_T01 (Zea mays), 3'ss of exon 22
gtaataaattcatttcactaactgaaaaatattttttaggtat-----tggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
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------------------------gtaagcatttctgtggtctatatgtcgttattataattatcttgattcatttctcactcaacttcattgcagAACCCTCAGTCTGTGAAGGATGCGGTATCAGTAGCTAACAATGCCTGTTGGGCTATTGGAGAATTAGCAATCAAG
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 22
gtaataaattcatttcactaactgaaaaatattttttaggtattggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
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-----gtatgtgtgtgcgtgatataaacttatccattagg-gttgcatttatttggtcattttattcttatattgtgtctggt--gtacagGAGATTTCTAAGGTAAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAG
upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 22
gtaataaattcatttcactaactgaaaaatattttttaggtattggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
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-----gtatgtgtgtgcctgatataaacttatccataagg-gttgcatttatttggtcattttattcttatactgtgtctggt--gtacagGAGATTTCTAAGGTAAAGGAGGCTATTTCAGTAGCAAATAATGCATGCTGGGCAATTGGAGAATTAGCAGTTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34550426|gb|CF518644.1|CF518644EST: ATTTGCACCCTCGTTTGTCTGATTTTCTCAATGTTGCGGCCAAGCAACTG AACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGG
genomic: ATTTGCACCCTCGTTTGTCTGATTTTCTCAATGTTGCGGCCAAGCAACTGgtaataaatt ... atttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taggtattggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
tttttttttttcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaataaattcatttcactaactgaaaaatattttttaggtattggtttttttttttcttataaattttatgtaatgaatgatttatacagAACACTTCTAAGCTGAAGGAAACTGTTTCAGTGGCGAATAATGCCTGTTGGGCAATTGGAGAATTAGCAGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA