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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaccatcaaacctttctagttttaccaaatttttttgtactaatatatttgtgtgtgcagCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAG

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 22
--------gtacaccatcaaacctttctagttttaccaa--atttttttgtactaatatatttgtgtgt-gcagCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAG
        | | |   |   |  ||  | |||| | ||   |||| |   |  |  ||   |  | ||| |||||||||||||||| |||||||||||||| || ||||| ||||| || ||||  |  ||  | || ||||||||||
gtattgtggaaaaatgtaggaatttcttggtttcaacattcatttatcaatgattttaatgtgatatgttgcagCTTCATTGGAAATCCATTATTATGTGGAAATTGGTTAGGATCCATATGTGATCTTTACATGCCAAAATCCAGAG

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA09G27950.1 (Glycine max), 3'ss of exon 21
--------gtacaccatcaaacctttctagttttaccaaatttttttgtactaatatatttgtgtg----tgcagCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAG
        | | |   |   |  ||| | ||||   ||    ||| |  |  | | |   ||||      ||||||||||| ||||| |||||||||||||| || ||||||||||| || ||||  || ||  | || ||||||| ||
gtattgtggaaaaatgtaggaattttttggtttctacattcatttatcaatgacttttaatgtgaaatgttgcagCTTCATGGGAAATCCATTATTATGTGGAAATTGGTTGGGATCCATATGTGATCCTTACATGCCAAAATCCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaacctttctagttttaccaaatttttttgtactaatatatttgtgtgtgcagCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAG
                                tactaat  putative branch site (score: 1)
           tagttttaccaaattt  TA-rich tract