1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tgaaaattgattgtctgctaggttagtttgtagaagagactgctgtacttttcatggtcatatatataaatctgacatgcttatggttatgggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCACGCGCCATGAACAATTGTAATAAAATTATCGAACAGTGCAACAAAAAC
species | Vitis vinifera |
transcript | Vv16s0013g00860.t01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCEST: gi|349826707|gb|FQ418798.1|FQ418798
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTTGATGCEST: gi|352773492|gb|FQ472274.1|FQ472274
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCEST: gi|110406617|gb|EC972196.1|EC972196
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTATGGAATCACGGTCTCCTTGATGCEST: gi|46909877|gb|CN545252.1|CN545252
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCEST: gi|77579006|gb|DV218336.1|DV218336
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTTGATGCEST: gi|352774234|gb|FQ474757.1|FQ474757
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCEST: gi|349824453|gb|FQ413120.1|FQ413120
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTTGATGCEST: gi|351027451|gb|FQ444700.1|FQ444700
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTTGATGCEST: gi|110406834|gb|EC972420.1|EC972420
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTATGGAATCACGGTCTCCTTGATGCEST: gi|352772283|gb|FQ469808.1|FQ469808
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
EST: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTG GTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
genomic: TTTTCAAGATTGCATGGACATGATCTTGCCCAGGCCCCAGCGCTGAGTTGgtaattcttt ... gggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGC
tacttttcatggtcatatatataaatctgacatgcttatggttatgggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCACGCGCCATGAACAATTGTAATAAAATTATCGAACAGTGCAACAAAAAC
atctgac putative branch site (score: 3)
tcatatatataaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaattgattgtctgctaggttagtttgtagaagagactgctgtacttttcatggtcatatatataaatctgacatgcttatggttatgggttggcagGTGTTGGAGATTATTCATGATCAAACTGTGGAATCACGGTCTCCTCGATGCACGCGCCATGAACAATTGTAATAAAATTATCGAACAGTGCAACAAAAAC
-gaaaatt
- - - - - -tgtctgc
- - - - - - - - - - - - - - - -agaagag
- - - - - - - - - - - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgct