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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgacttctcttctgctcacatttttctcactgttctgttgatttactcattcacgtttctcttgtcgtgcagTGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT

Basic information

species Vitis vinifera
transcript Vv15s0046g02200.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 21
--------------gtaaca-tgacttctcttctgctcacatttttctcact-gttctgttgatttactcattcacgtttctc------ttgtcgtgcagTGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT
               | ||| |   || |   ||    | || || || ||| ||||| |    |    ||||   || |  |      |     |||||||| ||  ||||| |||||||||| || || || ||||| |||||| |||| ||||| ||||||||| | || ||||| || |||||||||||||||||
tttcaatttttatgctgacagtattttatgaactttatatatattacttactagttctataatatccgccattgttgtgtgcccatgaatcactttgcagTGGAGGGTTGCGACTGAAGCGTGACATTACTGAATATGGAGAATTTCTGCGTAGTTTCAATGCTCCTTCTGTTGATGAAAAGTTTGAATTGTTGGGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300105|gb|CB976899.1|CB976899
EST:     TTTCAACCCTAG                         TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCG
genomic: TTTCAACCCTAGgtaacatgac ... tgtcgtgcagTGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCG
EST: gi|110373393|gb|EC937624.1|EC937624
EST:     TTGCATAAAGGGCTGCTTAATCATTGGCAGAAGTTCACTTTCAACCCTAG                         TGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCG
genomic: TTGCATAAAGGGCTGCTTAATCATTGGCAGAAGTTCACTTTCAACCCTAGgtaacatgac ... tgtcgtgcagTGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttttctcactgttctgttgatttactcattcacgtttctcttgtcgtgcagTGGTGGACTGCGATTGAAGCGTGATATAACAGAGTATGGTGAATTTGTGCGCAGTTTTAATGCTCCTACCGTGGATGAGAAATTTGAATTGTTGGGCAT
                                ttcacgtttctctt  CT-rich tract
                    ttgattta  TA-rich tract