Sequence
atgc intronic sequence ATGC exonic sequencegtaattacatgataacattgttcaagtcttatcaatggtttgtgtagccctattaactgatgctgatgtttgctgcttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA03G39290.1 (Glycine max), 3'ss of exon 22
gtaattac-atgataacattgttcaagtcttatcaatggtttgtg-tagccctattaactgatgc--tgatgtttgctg-------cttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
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gtgattactatctttactgcttttttttttttttcattttaaatgctattatttttaatttgtgtcatattttctcttgggggtatcttctagGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA20G38230.1 (Glycine max), 3'ss of exon 22
---------gtaattacatgataacattgttc--aagtcttatcaatggtttgtg-tagccctattaactgatgc--tgatgtttgctgcttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
| || | | || ||| | | | || || ||| | || | | | | | | | || | ||| |||| ||||||||| |||| || ||||| || || | ||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||
gtgattgctatctctaactagttttatcgttttgatatttactctattatttctaataatctcaccattttttccccttttgggggtatgttccagGTGAAATCAAAATTGAAAGGCCACCAGAAGCGTATTACTGGTTTAGCTTTTTCTACCAATCTTAACATACTGGTCTCATCTGGTGCTGATGCTCAT
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA19G41840.3 (Glycine max), 3'ss of exon 21
gtaattacatgataacattgttcaagtcttatcaatggtttgtgtagccctattaactgatgctgatgtttgctgct----------tctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
|| ||||| | | |||| || | | || | ||| ||| | || | | || || ||| || | ||||||| ||||| ||| ||||||| || ||||| || | ||||||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||||
gtgattactatctttaactgtttttttcattttaa-gatttatgttattatttttaatttgtctcatattttctcttgggtgtatattctagGTGAAATCTAAATTGAAGGGTCATCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAA
upper sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA10G29090.1 (Glycine max), 3'ss of exon 22
---------------------gtaattacatgataacattgttcaagtcttatcaatggtttgtgtagccctattaactgatgctgatgtttgctgcttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
|| || | | | | ||| | | | | || |||| | | | || || | || || ||| |||| ||||||||| |||| || ||||| || || | ||||||||||||||||| |||| ||| ||||| ||||| ||||||||||||||||||||
gtggattgctatctctaacttgttttttcgttttgatattttactattatttctaatgtctcacaccattttttccccttttg--ggcgtatg----ttccagGTGAAATCAAAATTGAAAGGCCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttatcaatggtttgtgtagccctattaactgatgctgatgtttgctgcttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
ctgcttct CT-rich tract
tattaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattacatgataacattgttcaagtcttatcaatggtttgtgtagccctattaactgatgctgatgtttgctgcttctagGTAAAATCAAAACTGAAGGGACACCAAAAACGCGTAACTGGTTTAGCTTTTTCCACCAGTCTAAACATCCTGGTCTCATCTGGTGCTGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT