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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaat-taattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
||| | || || | | | | | || | || | ||| | |||||| || ||| || | ||| |||||||||||| | ||||| || |||||||| || ||||| || |||||||| || || |||||||||||||| ||| | ||||| |||||||| || || |
------------------------------------------------gtatgcaactcttccaattcagtgttattggagtatcatcattctcatgtgctatgtatttaaat-gcttattttcctttatattg-tagGTGAACCCTGGAAATGCTCCATTAGTTGTTGGACAGCTACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaat-taattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
||| | || || | | | | | || | || | ||| | ||||||| || ||| || | ||| |||||||||||| | ||||| || |||||||| || ||||| || |||||||| || || |||||||||||||| ||| | ||||| |||||||| || || |
------------------------------------------------gtatgcaactcttccaattcagtgttattggagtatcatcattctcatgtgctatgtatttaaattc-ttattttcctttatattg-tagGTGAACCCTGGAAATGCTCCATTAGTTGTTGGACAGCTACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA14G06340.1 (Glycine max), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaat-tttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
| | || | || | | | | | | || |||| || | || || | || | ||| | ||| | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||| | || |||||||| || || | |
----------------------------------------------------gtataatagtagccttgcttatctcatgagtgctatctactcttt--ttctctgcctatgtaaaac-ttcgtgcctttctatacagGTGAACCCAGGGAATGCACCTTTAGTTGTTGGGCAGCTGCTAGATGATGAATGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTAC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaat-tttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
| | || | | || | | ||| | | || |||| || | || || | || || ||| | ||| | |||||||||| | ||||||||||||||||| |||||||||||||||||||| || |||||||||| || ||||| | || |||||||| || || | |
----------------------------------------------------gtataatagtagctttgcttatctcatgattgctatctactcttt--ttctctgcctatctaaaac-tttgtgcctttctatacagGTGAACCCAGGGAATGCACCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTAC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 20
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaattttagtcttcaattatttgattaaattaattgcttt-tgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
| ||| | | | | || | ||| || | | || | || ||| ||| | |||| | | || | | | || |||| ||| | || |||||||||||| | ||||| |||||||| || |||||||| ||||||||||||||||||||||||| || ||||| | ||||| ||||| || || | |
------------------------gtattatagtttgcatt--aataatgctgtaaccttgc---tttttacatg----aatactatctagtatctactttctctgccccactcataactttgtgccttgttttatagGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTAC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 20
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
| ||| | | | | || | ||| || | || || | | | | | ||| | | | | || | | | || | || |||| |||||||||||| | ||||| |||||||| || |||||||| ||||||||||||| ||||||||||| || ||||| | ||||| ||||| || || | |
------------------------gtattatagtttgcatt--aataatgctgtaatcttgc-------ttattacacaaat-------actatctactttctctgccccactcataacattgtgccttctttatagGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGATGATGAATGCCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTAC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
||| | | ||| | | | |||| | | || | || ||| ||||| | | | | | || |||||||| ||| | ||||| || ||||||||||||||| |||| ||||| ||||| || |||||||| || ||||| || ||||||||||| || || | |
--------------------------------------------------------gtatgtagtttctttag-acttttgttaaatatggtagg-attttcatgaaagaatta--tatatgcgatcccttttgtagGTGAATCCTGGGAATGCTCCCTTAGTTGTGGGGCAGTTGCTTGATGACGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTTTCTGTTCGTTCATTAC

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 21
gtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttc-aatgccctaattaattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
|| | | ||||| | | ||| ||||| | | || ||| || |||| || | ||| | | |||| |||| | | ||||||||||| | ||||| || |||||||| |||||| |||| ||||||||||| || |||||||| || ||||| || ||||| ||||| || || |||
---------------------------------------------gtataa-ggtttcctgggactacttttaatgcgttgg---agttcagtttttttttatgaaat--attta--tacgtttgattctgtcaa-agGTGAACCCTGGGAATGCTCCCTTAGTTGTCGGGCAGTTGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatagGTGAACCCTAGTAATGCACCTTTAGTTGTGGGGCAGCTGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGC
                           aattaat  putative branch site (score: 3)
 ttgcttttgcttctct  CT-rich tract
 ttagtcttcaattatt  TA-rich tract