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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagattcttttattacctttaaattctctagattttctttcattcatccaatgggttctatatattttcacaccaatattgttttggccacttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACC

Basic information

species Vitis vinifera
transcript Vv12s0028g03130.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA12G13410.1 (Glycine max), 3'ss of exon 21
gtaaagattcttttattacctttaaattctctagattttctttcattcatccaatgggttctatatattttcacaccaatattgttttggccacttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACC
           |    |  || |||  ||||    |  || ||  ||  || |||     || | | | |   |||| || || ||||  ||   | |  ||||||||||||| ||||||||||| ||||||||||| || ||||| || |||  ||| |||||||| ||||| |||||| |||||||
----------gtaagctttctctaagctctcc---tcctccttattt--tctaatttccactgtttttatggtcacccattttctttta-ccttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACACTTAATCCATATCATTCTGATCGCTTCTTACTGTCACC

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 21
gtaaagattcttttattacctttaaattctctagattttctttcat-tcatccaatgggttctatatattttcacaccaatattgttttggccacttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACC
                    |     |||||||   |||| | | | |  || |||     || | | | |   ||||||| || ||||  ||   | |  ||||||||||||| ||||||||||| ||||||||||| || ||||| || |||  ||| |||||||||||||| ||| || | |||||
-------------------gtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttctttta-ccttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370776|gb|EC932910.1|EC932910
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|37183929|gb|CF603283.1|CF603283
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGG
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGG
EST: gi|110699529|gb|EE076605.1|EE076605
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|110416060|gb|EC982014.1|EC982014
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|27584813|gb|CB007508.1|CB007508
EST:     CTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: CTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|110365725|gb|EC929133.1|EC929133
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|110708175|gb|EE085416.1|EE085416
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|161716967|gb|FC068834.1|FC068834
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
EST: gi|161713613|gb|FC062533.1|FC062533
EST:     TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGT                         GTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT
genomic: TCCGTAATCTTTCAAGCTATTACTACAAAGAAGCTAGCCTTCTGTTCTGTgtaaagattc ... acttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catccaatgggttctatatattttcacaccaatattgttttggccacttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACC
           ttctatatattttca  TA-rich tract