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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctttgctaacttcctcttattagctacttgataaattttctgtttagagtagaatttttttttttttttaattaacagtaagtgtttcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG

Basic information

species Vitis vinifera
transcript Vv11s0052g00320.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 19
gttcctttgctaacttcctcttattagctacttgataaattttctgtttagagtagaatttttttttttttttaattaacagtaagtgtttcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG
|| | | | || | ||| ||||| | | | ||| | ||| ||| || | ||| | || | | | || ||||| |||| |||| || | | ||| || || || ||| | || ||||||||||||||||||||||||||| | || || ||||| | | |||
gtacacatac-aatcctattttagtagctgaatcacagattctagattttttgtatgccttctgtttggtgaccatgctcttcatat-ttccacagCTTGGCATGAGATTCAATGACACAAGAACAAAGTCCTCTATTCTTCATGTTTTCCCATTCAACTCAGAGAAAAAAAGAGGCGGGGTTGCAGTGCATCTG

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA13G00420.1 (Glycine max), 3'ss of exon 19
gttcctttgctaacttcctcttattagct-acttgataaattttctgtttagagtagaatttttttttttttttaattaacagtaagtgtttcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG
|| ||| ||||| || | | | || || | || | | | | || || | ||| | | |||| | || | | ||| |||||||||||||||| ||| |||||||| ||| |||||||| || || ||||||||||| ||||| ||||| || || || ||||| | ||
gtctgttttgaaacttaaaatttcaacttcattttatggagctt-tatgca-attacaactatttatgactcttaag----atcaaattt----cagCTTGGGATGAATTTTGACACTGCCAGATCAGACTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACACGGGTG

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA09G06890.1 (Glycine max), 3'ss of exon 18
gttcctttgctaacttcctcttattagctactt------gataaattttctgtttagagtagaattttttttttt---ttttaattaacagtaagtgtt--------tcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG
|| ||| || || | | | || |||||| ||| | || || | | || || ||| || || | |||| || |||||||||||||||||| || | |||| | || |||||||| || |||||||||||||| |||||||||||| | || || ||||| || || |
gtgtgttttggaagttggtagtgcagtccacccccatcccgctccttttctttttgggctaatatatgtgcttccaagttataactagtggtgactgttatatcaaatctcagATTGGGATGAATTTTACGGCAGCTCGATCTGAATCATCAATTATTCATGTTTTCCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATTCAAACG

upper sequence: Vv11s0052g00320.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA17G06520.1 (Glycine max), 3'ss of exon 21
gttcctttgctaacttcctcttattagctacttgataaattttctgtttagagta-gaatttttttttttttttaattaacagtaagtgtt--------tcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG
|||| || | |||| | ||||| || | || | | |||| | || || || | |||||| | ||| |||||||||||||||| ||| ||||||| || |||||||| || || ||||||||||| ||||| ||||| || || || ||||| | ||
-----------------gtcttttttgaaacttaa--aatttcaacttcattttaaggagttttatgcaattacaactagttatgagtgttagatcaaatttcagCTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtttagagtagaatttttttttttttttaattaacagtaagtgtttcacagATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTG
                                aattaac  putative branch site (score: 2)
 tttagagtagaatttt  TA-rich tract