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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttctaaatcatctcttaatctgcttcaagtgaggaagatgtgctatacatatttgtcagggatcctattgtagggtagtaaattgaactagcataacttgatcagatgaattcggtgtgagaaacaatggcgtagtatcatcttatacaatgaagcattggttttctatgcatgcagTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGCAATACCAAATTGCATGCGCACATC

Basic information

species Vitis vinifera
transcript Vv11s0016g04620.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 21
gtaaacttctaaatcatctcttaatctgcttcaagtgaggaagatgtgctatacatatttgtcagggatcctattgtagggtagtaaattgaactagcataacttgatcagatgaattcggtgtgagaaacaatggcgtagtatcatcttatacaatgaagcattggttttctatgcatgcagTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGC--AATACCAAATTGCATGCGCACATC
                                                                                    || |   |   |||||   | |||    ||   |    ||   |   |      || |  |  | |||  |||| |   |   |  | ||||  | |||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||   | ||| | |||  |||  | |  |||| |  || |  
----------------------------------------------------------------------------------tatataaaaagtcagcatttgtggattttctgtgatgttggtttcatgtagcaagttaattac-ccctatgaaatgtaatttgtctactatatgtgtacagTGCCTCCTGCGTACTATGCTCATTTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTAATGTCCATGAAATTGCTAAATCTCGAGGTGCAAGGTCAAA--

upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 21
gtaaacttctaaatcatctcttaatctgcttcaagtgaggaagatgtgctatacatatttgtcagggatcctattgtagggtagtaaattgaactagcataacttgatcagatgaattcggtgtgagaaacaatggcgtagtatcatcttatacaatgaagcattggttttctatgcatgcagTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGCAATACCAAATTGCATGCGCACATC
                                                                             |  | |   | |  || |    | |    | || |  || | | | | |   | | | |  || |   |||| ||  ||||     ||  | || |  |  |||||| ||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||    |||||| | ||| ||      | |   |  |   
--------------------------------------------------------------------------aacaaagcaaacattaaaatttctttga---aaacatactaactggttttaaagcatattagt-tactgctatctaatgtaatg-----tttatgttttgcgtgtgcagTGCCTCCAGCATACTATGCTCATCTAGCAGCCTACAGGGCTCGATTCTACATGGAACCTGATGTTGCTGAGATTTCAAAACTGCGAGGAACAAGATCGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407837|gb|CF213464.1|CF213464
EST:     GTATGCAAGGTGCACTCGGTCTGTTTCTCTAG                         TTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACA
genomic: GTATGCAAGGTGCACTCGGTCTGTTTCTCTAGgtaaacttct ... atgcatgcagTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatggcgtagtatcatcttatacaatgaagcattggttttctatgcatgcagTTCCTCCTGCGTATTATGCTCATCTGGCAGCCTACAGAGCTCGATTCTACATGGAACCTGATAAGCCTGAGAATGCAATACCAAATTGCATGCGCACATC
                                       ttttctat  CT-rich tract
                    ttatacaat  TA-rich tract