Sequence
atgc intronic sequence ATGC exonic sequence...gaaaatcccgactttgtgacaagtggaggttgaagtgctgatcttttgaaacctgcccaaaaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os10g42439.1 (Oryza sativa), 3'ss of exon 21
--------------------------------------------gaaaat-cccgactttgtgacaagtggaggttgaagtgctgatcttttgaaacctgcccaaaaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
| || ||| ||| || | | || || || || | | ||| || | | | |||| ||| | || | | || || |||| |||||||| || || ||||||||||| ||| ||||||| || || ||||| || ||| ||||||||||| |||| || || ||||||| ||||| |
gtaagtaacttactgatgagttcatccatctcgagtactccgtagttcatattcgaagttgggatcattagaagtaacagcactaaa---tgaaaatgagcactaga---cgtgagtaaaataacaatgtgttct---ttcttagGTATGGAGTGCTTACAAGGACCAGAAGCACGATTTATTCCTCCCATCCAATGCACAGTCTTCTGCTGCTGGAGTTGCAGGGCTCATTGAGAGCTCATCGT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GRMZM2G001895_T01 (Zea mays), 3'ss of exon 15
----------------------gaaaatcccg--actttgtgacaagtggaggttgaagtgctgatcttttgaa---acctgcc---caaaaatttgtgaccaaattcctcat----------ctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
|| | | || | ||| || |||| | | | ||||| | || | || || ||| | | | ||||| | | | || || | || |||| |||||||| || |||||||||||||| || || |||||||| || ||||| |||||| ||||||||||||||||||| || ||||||| |||||||
gtgagtaacttcccactgcaatacaagttacagaaccctatga-aattggaaactatatttgtgatcatgacaagtgattcaccaaacagaaaatggcaaacaaatgctggactgaaaaaaaacattcctttttatgtagGTATGGAGTGCTTACAAAGACCAGAAGCACGACCTTTTCCTTCCATCCAATGCACAATCTTCTGCTGCTGGAATTGCTGGGCTCATTGAGAGCTCATCAT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GRMZM2G049288_T01 (Zea mays), 3'ss of exon 21
----------------------gaaaatcccg--actttgtgacaagtggaggttgaagtgctgatcttttgaaac---ctgcc---caaaaatttgtgaccaaattcctcatctttg-----ctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
|||| | || | | | | ||| | | | ||||| | || | || || ||| | | |||| | | | | | || |||| |||||||| || |||||||||||||| || || |||||||| || | ||| |||||| ||||||||||| ||||||| || ||||||| || |||
gtaagtaaatccccactgcaatacaaattacagaaccctattaaattgggaaactacacttgtgatcatgacaagtggtccaccaaacagaaaatgacaaagaaatgtttgactgaaaaaaatccgtttatgtagGTATGGAGTGCTTACAAAGACCAGAAGCACGACCTTTTCCTTCCATCCAGTGCACAATCTTCTGCTGCTGGAGTTGCTGGGCTCATTGAGAGCTCGTCAA
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA17G12950.1 (Glycine max), 3'ss of exon 22
-------------------------------------------------gaaaatcccgactttgtgacaa----gtggaggttg--aagtgctgatcttttgaaacctgcccaaaaatttgtgaccaa-attcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
|| | || || ||| | ||| | ||| | | || | | || ||| | | | || | || | || || |||||||||||||| || |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||
gtaagtctcaacacatgtagagtagtaatatggcatggttgttcgagtttttggcttttacctcttggcacctctgtgcattttgctgcatcctgttgcaagtatacatatctaagtttttaccttctacaatcattttccctcctacgttc-cagGTTTGGAGTGCTTACAAAGACCAGAAGCATGATCTCTTCCTCCCTTCAAATGCTCAATCTGCAGCTGCTGGCATTGCTGGTCTCATTGAGAATTCATCAT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA05G08040.2 (Glycine max), 3'ss of exon 22
--------------------------------------gaaaatcccgactttgtgacaagtggaggttgaagtgctgatctt--ttgaaacctgc--ccaaaa----atttgtgaccaaat--tcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
| | | || || | || | | ||| | || ||| | |||| | | | || | | || | || | ||| | || |||||||||||||| || |||||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||
gtaagtctcaacagtaatttaacatggctgtttgagttgttggctttagcctcttggcacttc-agatgtggtttctgcttttgtttgcatcctgttgctagtatactatccatatctaagttttctccttctacaactgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATGCTCAATCTGCAGCTGCTGGCATTGCTGGTCTCATTGAGAATTCATCAT
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: PP1S60_221V6.1 (Physcomitrella patens), 3'ss of exon 21
-------------------------------------------------------------------------gaaaatcccgactttgtgacaagtggaggttgaagtgctgatcttttgaaacctgcccaa-----aaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
||| | || | | | || |||| || ||||| | ||| | || | || ||| ||||| | | | | | ||| ||||| |||||||| || || || |||||||| ||||| ||| | ||||| ||||| ||| |||| || ||||| || |||||||||||||| || || ||
gtacgatctctttctatctctgtctaggttttgctaacatttcgagcatgggcaccttaagcattcgaaactaaaaagtgtcgttctact--ctggttcaggt-gacgtgcttgttgttttatgattgttggattgttgaaactgttgacaaatgagttgttt---cggaattatcagGTATGGAGTGCTTACAAGGATCAGAAGCACGATCTCTTCTTACCTTCAAATGCCCAAACTGCCGCAGCTGGTATAGCTGGTCTTATTGAAAACTCCTCTG
upper sequence: Vv11s0016g04420.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: PP1S107_71V6.1 (Physcomitrella patens), 3'ss of exon 24
-------------------------------------------------------------------------------------------gaaaatcccgactttgtga-caagtggaggttgaagtgctgatcttttg---aaacctgcccaaaaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
| | ||| | || | | || | || || || ||| | | || |||||| | | ||| | || |||| | |||||||||||||| || ||||| || ||||||||||| ||||| ||||| ||||| ||| ||||||| || || | ||||||||||||||| | || ||
gtaagaattctttttaaatcttttcaataggaaatcgcttaaatatctcctgttatttcactcctgtccacgtagtaactagtgtcttcaggcacctccagcacttacaagcgggtaaacttttgtttgatgtgcttcgggttagtagtgtgttgaaatttctaattaaagtgt--atttttg--aacctgtcagGTTTGGAGTGCTTACAAAGATCAAAAGCATGATCTGTTCCTACCTTCAAATGCCCAAACTGCTGCAGCAGGTGTAGCTGGTCTTATTGAGGACTCCTCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110382043|gb|EC938328.1|EC938328EST: CTGAAGGGGCCCATTGTTCTAAAGTGCGTGACATATTGAGTGCCTCTGAT GTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAAT
genomic: CTGAAGGGGCCCATTGTTCTAAAGTGCGTGACATATTGAGTGCCTCTGATgtaagtcttg ... ggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaacctgcccaaaaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
aaaaatttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaatcccgactttgtgacaagtggaggttgaagtgctgatcttttgaaacctgcccaaaaatttgtgaccaaattcctcatctttgctggatttgcagGTTTGGAGTGCCTATAAAGACCAGAAGCATGATCTATTCCTTCCTTCTAATGCTCAATCTGCTGCTGCTGGAATTGCTGGTCTTATTGAGAATTCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
gaaaatc
- - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - acctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaccaaa