1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtcttagcctgaactgagacctatagttttttgatttaaagatattactaaatttgagattttaaattgaaattactaaaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCTCTAATGTTCTAAATGTTTTAGTATCATCGGGAGCTGATGCTCAG
species | Vitis vinifera |
transcript | Vv09s0002g07020.t01 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAG GTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCEST: gi|161718375|gb|FC065016.1|FC065016
genomic: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAGgtcttagcct ... aaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTC
EST: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAG GTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCEST: gi|30133088|gb|CB918427.1|CB918427
genomic: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAGgtcttagcct ... aaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTC
EST: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAG GTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCEST: gi|110684636|gb|EE062143.1|EE062143
genomic: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAGgtcttagcct ... aaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTC
EST: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAG GTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTC
genomic: TAGGCATGGAGGATTCTTCAATTCAAATCTACAATGTCCGGGTTGATGAGgtcttagcct ... aaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTC
atttaaagatattactaaatttgagattttaaattgaaattactaaaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCTCTAATGTTCTAAATGTTTTAGTATCATCGGGAGCTGATGCTCAG
tactaaa putative branch site (score: 1)
atattactaaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttagcctgaactgagacctatagttttttgatttaaagatattactaaatttgagattttaaattgaaattactaaaatgaacagGTCAAAAGCAAGCTCAAAGGTCATCAGAAGAAAGTAACTGGCCTTGCTTTCTCTAATGTTCTAAATGTTTTAGTATCATCGGGAGCTGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT